大规模数据生成中评估卤素-π相互作用的QM方法比较。

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Marc U Engelhardt, Markus O Zimmermann, Finn Mier, Frank M Boeckler
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引用次数: 0

摘要

卤素π相互作用在分子识别过程、药物设计和治疗策略中发挥着关键作用,为增强和微调药物的结合亲和力和特异性提供了独特的机会。本研究系统地对量子力学(QM)方法和基集的各种组合进行基准测试,以表征模型系统中的卤素-π相互作用。我们从CCSD(T)/CBS理论水平的参考计算精度和运行效率两方面对密度泛函理论(DFT)方法和基于波函数的后高频方法进行了评估。通过平衡这些关键方面,我们的目标是确定适合高吞吐量应用程序的最佳配置。我们的研究结果表明,MP2使用了相当大的TZVPP基集,与参考计算非常吻合,在精度和计算效率之间取得了平衡。这使我们能够生成大型,可靠的数据集,这将作为开发和训练能够准确捕获卤素-π相互作用强度的机器学习模型的基础,从而为药物化学分析提供强大的数据驱动基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Comparison of QM Methods for the Evaluation of Halogen-π Interactions for Large-Scale Data Generation.

Halogen-π interactions play a pivotal role in molecular recognition processes, drug design, and therapeutic strategies, providing unique opportunities for enhancing and fine-tuning the binding affinity and specificity of pharmaceutical agents. The present study systematically benchmarks various combinations of quantum mechanical (QM) methods and basis sets to characterize halogen-π interactions in model systems. We evaluate both density functional theory (DFT) methods and wave function-based post-HF methods in terms of accuracy to reference calculations at the CCSD(T)/CBS level of theory and runtime efficiency. By balancing these crucial aspects, we aim to identify an optimal configuration suitable for high-throughput applications. Our results indicate that MP2 using the reasonably large TZVPP basis set is in excellent agreement with reference calculations, striking a balance between accuracy and computational efficiency. This allows us to generate large, reliable data sets, which will serve as a basis to develop and train machine-learning models capable of accurately capturing the strength of halogen-π interactions, thereby providing a robust data-driven foundation for medicinal chemistry analysis.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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