机器学习和大量测序的结合显示外泌体相关基因FOSB参与了腹主动脉瘤的发展。

IF 4.6 2区 生物学 Q2 CELL BIOLOGY
Frontiers in Cell and Developmental Biology Pub Date : 2025-05-22 eCollection Date: 2025-01-01 DOI:10.3389/fcell.2025.1554972
Xianlu Ma, Hongjie Zhou, Ren Wang
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引用次数: 0

摘要

背景:腹主动脉瘤(AAA)以腹主动脉病理性扩张为特征,与免疫反应和炎症有关。然而,参与AAA发生和发展的关键基因仍不清楚。方法:应用加权基因共表达网络分析(WGCNA)和支持向量机递归特征消除(SVM-RFE)从基因表达综合(GEO)数据集中筛选重要基因。利用CIBERSORT算法分析这些基因与免疫细胞浸润的相关性。此外,我们在小鼠AAA模型中验证了FosB原癌基因AP-1转录因子亚基(FosB)的表达,FosB在血管平滑肌细胞(VSMCs)中过表达和敲除。分别采用CCK-8法和流式细胞术评估细胞活力和凋亡。ELISA法测定细胞上清液中MMP2和MMP9的表达水平。采用qRT-PCR和Western blot分析收缩相关标志物α-SMA、SM22α及合成标志物OPN的表达。结果:共鉴定出44个差异表达基因,揭示了AAA与正常样本之间不同的表达模式。WGCNA确定了两个与免疫和炎症反应密切相关的关键基因模块,这些模块的中心基因在免疫相关途径中富集。FOSB与单核细胞、浆细胞、嗜酸性粒细胞和T滤泡辅助细胞呈正相关。在血管炎诱导的AAA小鼠模型中进一步验证了这一点。过表达FOSB可显著提高VSMCs中MMP2和MMP9的表达水平。此外,FOSB过表达抑制收缩型表型标记α-SMA和SM22α的表达,同时促进合成型表型标记OPN的表达。结论:外泌体相关基因FOSB参与了腹主动脉瘤的发生发展。FOSB是缓解腹主动脉瘤进展的一个有希望的潜在治疗靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Integration of machine learning and bulk sequencing revealed exosome-related gene FOSB was involved in the progression of abdominal aortic aneurysm.

Background: Abdominal aortic aneurysm (AAA), characterized by the pathological dilation of the abdominal aorta, was associated with immune response and inflammation. However, the key genes involved in the occurrence and progression of AAA remains unclear.

Methods: We applied Weighted Gene Co-expression Network Analysis (WGCNA) and Support Vector Machine Recursive Feature Elimination (SVM-RFE) to screen for significant genes from the Gene Expression Omnibus (GEO) dataset. The CIBERSORT algorithm was utilized to analyze the correlation between these genes and immune cell infiltration. Additionally, we validated the expression of FosB proto-oncogene, AP-1 transcription factor subunit (FOSB) in a murine model of AAA. FOSB was overexpressed and knocked out in vascular smooth muscle cells (VSMCs). Cell viability and apoptosis were assessed using the CCK-8 assay and flow cytometry, respectively. The levels of MMP2 and MMP9 in the cell supernatants were quantified by ELISA. The expression of contraction-related markers α-SMA and SM22α, and the synthetic marker OPN, was analyzed by qRT-PCR and Western blot.

Results: A total of 44 differentially expressed genes were identified, revealing distinct expression patterns between AAA and normal samples. WGCNA identified two key gene modules that were strongly correlated with immune and inflammatory responses, with the hub genes from these modules enriched in immune-related pathways. FOSB was positively correlated with monocytes, plasma cells, eosinophils, and T follicular helper cells. It was further validated in an AngII-induced AAA mouse model. Overexpression of FOSB significantly increased the expression levels of MMP2 and MMP9 in VSMCs. Additionally, FOSB overexpression inhibited the expression of contractile phenotype markers α-SMA and SM22α, while promoting the expression of synthetic phenotype marker OPN.

Conclusion: Exosome-related gene FOSB was involved in the progression of abdominal aortic aneurysm. FOSB represents a promising potential therapeutic target for mitigating the progression of Abdominal Aortic Aneurysm.

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来源期刊
Frontiers in Cell and Developmental Biology
Frontiers in Cell and Developmental Biology Biochemistry, Genetics and Molecular Biology-Cell Biology
CiteScore
9.70
自引率
3.60%
发文量
2531
审稿时长
12 weeks
期刊介绍: Frontiers in Cell and Developmental Biology is a broad-scope, interdisciplinary open-access journal, focusing on the fundamental processes of life, led by Prof Amanda Fisher and supported by a geographically diverse, high-quality editorial board. The journal welcomes submissions on a wide spectrum of cell and developmental biology, covering intracellular and extracellular dynamics, with sections focusing on signaling, adhesion, migration, cell death and survival and membrane trafficking. Additionally, the journal offers sections dedicated to the cutting edge of fundamental and translational research in molecular medicine and stem cell biology. With a collaborative, rigorous and transparent peer-review, the journal produces the highest scientific quality in both fundamental and applied research, and advanced article level metrics measure the real-time impact and influence of each publication.
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