{"title":"工程P450单加氧酶F182L-CYP199A4催化α-羟基酮C-C键断裂机理研究","authors":"Sujiao Zhao, Yongjun Liu","doi":"10.1021/acs.inorgchem.4c05390","DOIUrl":null,"url":null,"abstract":"<p><p>In addition to the typical oxygen insertion reaction, some cytochrome P450 also catalyze the C-C cleavage, and most P450 employs Cpd I to trigger lyase reactions. There is also evidence to support an alternative mechanism, in which a species earlier than the formation of Cpd I was suggested to perform the lyase reaction. To understand the detailed reaction mechanism, we performed quantum mechanics/molecular mechanics (QM/MM) calculations to explore the cleavage mechanism of mutated CYP199A4 (F182L-CYP199A4). Our calculation results reveal that the peroxoanion (Fe(III)-O-O<sup>2-</sup>) rather than oxo-ferrous (Fe(III)-O-O<sup>1-</sup>) and Cpd I is responsible for initiating the reaction. The Fe(III)-O-O<sup>2-</sup> nucleophilic directly attacks the carbonyl of the substrate, which first generates an unstable peroxo intermediate, followed by the Baeyer-Villiger-type oxidative cleavage of the C-C bond. During the reaction, complex electronic and structural rearrangements are involved. In the active site of F182L-CYP199A4, the formation of Cpd I is successfully slowed down owing to the absence of mediated water to promote two steps of protonation of Fe-coordinated dioxygen. In addition, Fe(III)-O-O<sup>2-</sup> shows higher reactivity than Fe(III)-O-O<sup>1-</sup> toward C-C cleavage. In general, the fact that CYP can also employ the peroxoanion to execute the C-C bond cleavage further enriches the catalytic chemistry of P450.</p>","PeriodicalId":40,"journal":{"name":"Inorganic Chemistry","volume":" ","pages":"11342-11356"},"PeriodicalIF":4.3000,"publicationDate":"2025-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Mechanistic Investigation on the C-C Bond Cleavage of α-Hydroxy Ketone Catalyzed by Engineering P450 Monooxygenase Enzyme F182L-CYP199A4.\",\"authors\":\"Sujiao Zhao, Yongjun Liu\",\"doi\":\"10.1021/acs.inorgchem.4c05390\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>In addition to the typical oxygen insertion reaction, some cytochrome P450 also catalyze the C-C cleavage, and most P450 employs Cpd I to trigger lyase reactions. There is also evidence to support an alternative mechanism, in which a species earlier than the formation of Cpd I was suggested to perform the lyase reaction. To understand the detailed reaction mechanism, we performed quantum mechanics/molecular mechanics (QM/MM) calculations to explore the cleavage mechanism of mutated CYP199A4 (F182L-CYP199A4). Our calculation results reveal that the peroxoanion (Fe(III)-O-O<sup>2-</sup>) rather than oxo-ferrous (Fe(III)-O-O<sup>1-</sup>) and Cpd I is responsible for initiating the reaction. The Fe(III)-O-O<sup>2-</sup> nucleophilic directly attacks the carbonyl of the substrate, which first generates an unstable peroxo intermediate, followed by the Baeyer-Villiger-type oxidative cleavage of the C-C bond. During the reaction, complex electronic and structural rearrangements are involved. In the active site of F182L-CYP199A4, the formation of Cpd I is successfully slowed down owing to the absence of mediated water to promote two steps of protonation of Fe-coordinated dioxygen. In addition, Fe(III)-O-O<sup>2-</sup> shows higher reactivity than Fe(III)-O-O<sup>1-</sup> toward C-C cleavage. In general, the fact that CYP can also employ the peroxoanion to execute the C-C bond cleavage further enriches the catalytic chemistry of P450.</p>\",\"PeriodicalId\":40,\"journal\":{\"name\":\"Inorganic Chemistry\",\"volume\":\" \",\"pages\":\"11342-11356\"},\"PeriodicalIF\":4.3000,\"publicationDate\":\"2025-06-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Inorganic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.inorgchem.4c05390\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/6/5 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, INORGANIC & NUCLEAR\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Inorganic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.inorgchem.4c05390","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/6/5 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"CHEMISTRY, INORGANIC & NUCLEAR","Score":null,"Total":0}
引用次数: 0
摘要
除了典型的氧插入反应外,一些细胞色素P450还催化C-C裂解,大多数P450利用cppd I触发裂解酶反应。也有证据支持另一种机制,其中一种比Cpd I形成更早的物种被认为进行裂解酶反应。为了了解具体的反应机理,我们通过量子力学/分子力学(QM/MM)计算来探索突变CYP199A4 (F182L-CYP199A4)的裂解机制。我们的计算结果表明,引发反应的是过氧阴离子(Fe(III)- o- o2 -)而不是氧化亚铁离子(Fe(III)- o- o1 -)和Cpd I。Fe(III)- o - o2 -亲核试剂直接攻击底物的羰基,首先生成不稳定的过氧化物中间体,随后C-C键发生baeyer - villiger型氧化裂解。在反应过程中,涉及复杂的电子和结构重排。在F182L-CYP199A4的活性位点,由于缺乏介导的水来促进铁配位双氧的两步质子化,Cpd I的形成被成功地减缓。此外,Fe(III)- o - o2 -比Fe(III)- o - o2 -对C-C的裂解反应活性更高。总的来说,CYP还可以利用过氧阴离子进行C-C键的裂解,这进一步丰富了P450的催化化学性质。
Mechanistic Investigation on the C-C Bond Cleavage of α-Hydroxy Ketone Catalyzed by Engineering P450 Monooxygenase Enzyme F182L-CYP199A4.
In addition to the typical oxygen insertion reaction, some cytochrome P450 also catalyze the C-C cleavage, and most P450 employs Cpd I to trigger lyase reactions. There is also evidence to support an alternative mechanism, in which a species earlier than the formation of Cpd I was suggested to perform the lyase reaction. To understand the detailed reaction mechanism, we performed quantum mechanics/molecular mechanics (QM/MM) calculations to explore the cleavage mechanism of mutated CYP199A4 (F182L-CYP199A4). Our calculation results reveal that the peroxoanion (Fe(III)-O-O2-) rather than oxo-ferrous (Fe(III)-O-O1-) and Cpd I is responsible for initiating the reaction. The Fe(III)-O-O2- nucleophilic directly attacks the carbonyl of the substrate, which first generates an unstable peroxo intermediate, followed by the Baeyer-Villiger-type oxidative cleavage of the C-C bond. During the reaction, complex electronic and structural rearrangements are involved. In the active site of F182L-CYP199A4, the formation of Cpd I is successfully slowed down owing to the absence of mediated water to promote two steps of protonation of Fe-coordinated dioxygen. In addition, Fe(III)-O-O2- shows higher reactivity than Fe(III)-O-O1- toward C-C cleavage. In general, the fact that CYP can also employ the peroxoanion to execute the C-C bond cleavage further enriches the catalytic chemistry of P450.
期刊介绍:
Inorganic Chemistry publishes fundamental studies in all phases of inorganic chemistry. Coverage includes experimental and theoretical reports on quantitative studies of structure and thermodynamics, kinetics, mechanisms of inorganic reactions, bioinorganic chemistry, and relevant aspects of organometallic chemistry, solid-state phenomena, and chemical bonding theory. Emphasis is placed on the synthesis, structure, thermodynamics, reactivity, spectroscopy, and bonding properties of significant new and known compounds.