panoptosis相关基因在预测乳腺癌生存和免疫前景中的作用。

IF 2.6 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BioMed Research International Pub Date : 2025-05-28 eCollection Date: 2025-01-01 DOI:10.1155/bmri/3423698
Yuxi Zhang, Zheming Liu, Yixuan Zhang, Xue Zhang, Yi Yao, Chi Zhang
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引用次数: 0

摘要

背景:PANoptosis在乳腺癌(BC)中的功能尚不清楚。我们构建了预测BC预后的nomogram模型,以识别高危患者,帮助他们得到更准确的治疗。方法:采用Cox回归和最小绝对收缩选择算子(LASSO)算法筛选panoptosis相关基因(PRGs),并通过LASSO系数计算panoptosis相关评分(PRS)。通过功能富集、体细胞突变和肿瘤微环境(tumor microenvironment, TME)分析,完成panoptosis相关免疫细胞的鉴定和药敏差异分析,并通过生存分析验证关键基因。结果:根据PRS将患者分为低危组和高危组,揭示了风险评分与总生存率之间的负相关关系。分析显示,两个风险队列的差异表达基因主要集中在与免疫系统相关的通路中。此外,我们在两个队列中检测到免疫检查点、肿瘤突变负荷和TME的显著差异。此外,KLHDC7B、GNG8、IGKV1OR2-108和IGHD被鉴定为关键基因。我们还发现hub基因在肿瘤组织中高度表达,而在hub基因阴性的队列中,B细胞、CD4+和CD8+ T细胞假装呈阳性。预后分析显示,随着时间的推移,关键基因对生存有不利影响。结论:建立了基于风险评分的精准预测模型,验证了PRGs在BC TME及药物敏感性调控中的重要意义,为后续分子机制研究提供关键感知,为临床实践中更加个性化的治疗决策提供依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The Role of PANoptosis-Related Genes in Predicting Breast Cancer Survival and Immune Prospect.

Background: The function of PANoptosis in breast cancer (BC) remains indistinct. We constructed a nomogram model to predict the prognosis of BC to identify high-risk patients and help them receive more accurate treatment. Method: We used Cox regression and least absolute shrinkage and selection operator (LASSO) algorithm to select PANoptosis-related genes (PRGs) and calculated the PANoptosis-related score (PRS) by LASSO coefficient. Through functional enrichment, somatic mutation, and tumor microenvironment (TME) analysis, we completed the identification of PANoptosis-related immune cells and difference analysis of drug sensitivity and then verified key genes by performing survival analysis. Results: Patients were divided into low- and high-risk cohorts depending on PRS, and the negative association between risk scores and overall survival was disclosed. Analysis showed that differentially expressed genes in the two risk cohorts were mainly concentrated among pathways related to the immune system. Moreover, we detected distinguished differences in immune checkpoints, tumor mutation load, and TME in the two cohorts. Furthermore, KLHDC7B, GNG8, IGKV1OR2-108, and IGHD were identified as key genes. We also found that hub genes were highly expressed in tumor tissues, while B cells, CD4+, and CD8+ T cells pretended to be positive among the hub gene-negative cohort. Prognosis analysis showed that pivotal genes had adverse effects on survival over time. Conclusion: We built a precise prediction model based on risk scores and proved the significance of PRGs in BC TME and medicine sensitivity regulation, providing key perception for subsequent molecular mechanism studies and contributing to more personalized treatment decisions in clinical practice.

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来源期刊
BioMed Research International
BioMed Research International BIOTECHNOLOGY & APPLIED MICROBIOLOGY-MEDICINE, RESEARCH & EXPERIMENTAL
CiteScore
6.70
自引率
0.00%
发文量
1942
审稿时长
19 weeks
期刊介绍: BioMed Research International is a peer-reviewed, Open Access journal that publishes original research articles, review articles, and clinical studies covering a wide range of subjects in life sciences and medicine. The journal is divided into 55 subject areas.
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