Han Wang, Ziyan Bing, Lu Li, Ziwen Gao, Chuks Fidelis Nwanade, Na Dong, Ke Li, Leyan Du, Zhijun Yu
{"title":"性表观遗传学：全基因组分析揭示了媒介蜱长角血蜱的差异DNA甲基化。","authors":"Han Wang, Ziyan Bing, Lu Li, Ziwen Gao, Chuks Fidelis Nwanade, Na Dong, Ke Li, Leyan Du, Zhijun Yu","doi":"10.1186/s13071-025-06810-2","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Haemaphysalis longicornis is an important vector that transmits a variety of pathogens to humans and animals. This tick species is unique for having two separate reproductive populations: bisexual and parthenogenetic populations. In bisexual populations, morphological differences exist between the males and females, with the females often larger than the males. DNA methylation, as a key epigenetic modification, plays a crucial role in biological processes such as the maintenance of normal cellular function, the regulation of gene expression, and embryonic development. However, the epigenetic mechanism underlying sex differentiation in the bisexual population of H. longicornis has been overlooked.</p><p><strong>Methods: </strong>In the present study, the global DNA methylation profiles of the female and male H. longicornis ticks from the bisexual population were explored using whole-genome bisulfite sequencing. Differentially methylated regions (DMRs) were identified, followed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of DMR-related genes.</p><p><strong>Results: </strong>The results revealed that DNA methylation levels in H. longicornis varied by sex and sequence context (CG, CHG, and CHH). The 3' untranslated region (UTR) had the highest methylation in the CG context, followed by exons, introns, and CGI_shore regions. Female ticks generally exhibited higher methylation levels than males, particularly in gene body regions. A total of 10,460 DMRs were identified, with 5282 hypermethylated and 5178 hypomethylated. Further, GO and KEGG pathway analyses showed that differentially methylated genes (DMGs) were highly enriched in binding and metabolic pathways.</p><p><strong>Conclusions: </strong>These results broaden our understanding of DNA methylation changes associated with the female and male of H. longicornis and provide an important theoretical basis for subsequent studies of epigenetic mechanisms of sex differences in ticks.</p>","PeriodicalId":19793,"journal":{"name":"Parasites & Vectors","volume":"18 1","pages":"202"},"PeriodicalIF":3.0000,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12128260/pdf/","citationCount":"0","resultStr":"{\"title\":\"Sexual epigenetics: genome-wide analysis revealed differential DNA methylation in the vector tick Haemaphysalis longicornis.\",\"authors\":\"Han Wang, Ziyan Bing, Lu Li, Ziwen Gao, Chuks Fidelis Nwanade, Na Dong, Ke Li, Leyan Du, Zhijun Yu\",\"doi\":\"10.1186/s13071-025-06810-2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Haemaphysalis longicornis is an important vector that transmits a variety of pathogens to humans and animals. This tick species is unique for having two separate reproductive populations: bisexual and parthenogenetic populations. In bisexual populations, morphological differences exist between the males and females, with the females often larger than the males. DNA methylation, as a key epigenetic modification, plays a crucial role in biological processes such as the maintenance of normal cellular function, the regulation of gene expression, and embryonic development. However, the epigenetic mechanism underlying sex differentiation in the bisexual population of H. longicornis has been overlooked.</p><p><strong>Methods: </strong>In the present study, the global DNA methylation profiles of the female and male H. longicornis ticks from the bisexual population were explored using whole-genome bisulfite sequencing. Differentially methylated regions (DMRs) were identified, followed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of DMR-related genes.</p><p><strong>Results: </strong>The results revealed that DNA methylation levels in H. longicornis varied by sex and sequence context (CG, CHG, and CHH). The 3' untranslated region (UTR) had the highest methylation in the CG context, followed by exons, introns, and CGI_shore regions. Female ticks generally exhibited higher methylation levels than males, particularly in gene body regions. A total of 10,460 DMRs were identified, with 5282 hypermethylated and 5178 hypomethylated. Further, GO and KEGG pathway analyses showed that differentially methylated genes (DMGs) were highly enriched in binding and metabolic pathways.</p><p><strong>Conclusions: </strong>These results broaden our understanding of DNA methylation changes associated with the female and male of H. longicornis and provide an important theoretical basis for subsequent studies of epigenetic mechanisms of sex differences in ticks.</p>\",\"PeriodicalId\":19793,\"journal\":{\"name\":\"Parasites & Vectors\",\"volume\":\"18 1\",\"pages\":\"202\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12128260/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Parasites & Vectors\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1186/s13071-025-06810-2\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PARASITOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Parasites & Vectors","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1186/s13071-025-06810-2","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PARASITOLOGY","Score":null,"Total":0}
Sexual epigenetics: genome-wide analysis revealed differential DNA methylation in the vector tick Haemaphysalis longicornis.
Background: Haemaphysalis longicornis is an important vector that transmits a variety of pathogens to humans and animals. This tick species is unique for having two separate reproductive populations: bisexual and parthenogenetic populations. In bisexual populations, morphological differences exist between the males and females, with the females often larger than the males. DNA methylation, as a key epigenetic modification, plays a crucial role in biological processes such as the maintenance of normal cellular function, the regulation of gene expression, and embryonic development. However, the epigenetic mechanism underlying sex differentiation in the bisexual population of H. longicornis has been overlooked.
Methods: In the present study, the global DNA methylation profiles of the female and male H. longicornis ticks from the bisexual population were explored using whole-genome bisulfite sequencing. Differentially methylated regions (DMRs) were identified, followed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of DMR-related genes.
Results: The results revealed that DNA methylation levels in H. longicornis varied by sex and sequence context (CG, CHG, and CHH). The 3' untranslated region (UTR) had the highest methylation in the CG context, followed by exons, introns, and CGI_shore regions. Female ticks generally exhibited higher methylation levels than males, particularly in gene body regions. A total of 10,460 DMRs were identified, with 5282 hypermethylated and 5178 hypomethylated. Further, GO and KEGG pathway analyses showed that differentially methylated genes (DMGs) were highly enriched in binding and metabolic pathways.
Conclusions: These results broaden our understanding of DNA methylation changes associated with the female and male of H. longicornis and provide an important theoretical basis for subsequent studies of epigenetic mechanisms of sex differences in ticks.
期刊介绍：
Parasites & Vectors is an open access, peer-reviewed online journal dealing with the biology of parasites, parasitic diseases, intermediate hosts, vectors and vector-borne pathogens. Manuscripts published in this journal will be available to all worldwide, with no barriers to access, immediately following acceptance. However, authors retain the copyright of their material and may use it, or distribute it, as they wish.
Manuscripts on all aspects of the basic and applied biology of parasites, intermediate hosts, vectors and vector-borne pathogens will be considered. In addition to the traditional and well-established areas of science in these fields, we also aim to provide a vehicle for publication of the rapidly developing resources and technology in parasite, intermediate host and vector genomics and their impacts on biological research. We are able to publish large datasets and extensive results, frequently associated with genomic and post-genomic technologies, which are not readily accommodated in traditional journals. Manuscripts addressing broader issues, for example economics, social sciences and global climate change in relation to parasites, vectors and disease control, are also welcomed.
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