{"title":"物理先验均值驱动贝叶斯委员会分子动力学(BCMD):从Born-Oppenheimer动力学到曲率引导的非绝热动力学。","authors":"Chong Teng, and , Junwei Lucas Bao*, ","doi":"10.1021/acs.jctc.5c00411","DOIUrl":null,"url":null,"abstract":"<p >Molecular dynamics (MD), when combined with high-accuracy quantum mechanics for energy and atomic force evaluations, is an indispensable tool extensively used to uncover in-depth atomistic details of chemical processes. However, the computational cost of first-principles predictions can be prohibitive. Here, we introduce a direct dynamics method, Bayesian Committee molecular dynamics (BCMD), which integrates Bayesian learning with a physically informed prior mean to efficiently construct potential energy surfaces (PESs) on the fly. This approach reduces quantum mechanical (QM) evaluations while maintaining high accuracy in nuclear motion propagation. The learned surrogate surfaces enhance the efficiency of the dynamics by guiding further atomic motions. We apply BCMD to both ground-state thermal chemistry and nonadiabatic photochemistry, demonstrating its versatility across different electronic structure regimes. Our approach is highly data-efficient and embeds chemical dynamics knowledge into the learning, enabling domain knowledge-informed, surrogate-based <i>ab initio</i> MD for mechanism exploration, photochemistry, and atmospheric chemistry.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"21 12","pages":"5845–5857"},"PeriodicalIF":5.5000,"publicationDate":"2025-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Physical Prior Mean-Driven Bayesian Committee Molecular Dynamics (BCMD): From Born–Oppenheimer Dynamics to Curvature-Guided Non-Adiabatic Dynamics\",\"authors\":\"Chong Teng, and , Junwei Lucas Bao*, \",\"doi\":\"10.1021/acs.jctc.5c00411\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Molecular dynamics (MD), when combined with high-accuracy quantum mechanics for energy and atomic force evaluations, is an indispensable tool extensively used to uncover in-depth atomistic details of chemical processes. However, the computational cost of first-principles predictions can be prohibitive. Here, we introduce a direct dynamics method, Bayesian Committee molecular dynamics (BCMD), which integrates Bayesian learning with a physically informed prior mean to efficiently construct potential energy surfaces (PESs) on the fly. This approach reduces quantum mechanical (QM) evaluations while maintaining high accuracy in nuclear motion propagation. The learned surrogate surfaces enhance the efficiency of the dynamics by guiding further atomic motions. We apply BCMD to both ground-state thermal chemistry and nonadiabatic photochemistry, demonstrating its versatility across different electronic structure regimes. Our approach is highly data-efficient and embeds chemical dynamics knowledge into the learning, enabling domain knowledge-informed, surrogate-based <i>ab initio</i> MD for mechanism exploration, photochemistry, and atmospheric chemistry.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\"21 12\",\"pages\":\"5845–5857\"},\"PeriodicalIF\":5.5000,\"publicationDate\":\"2025-06-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/acs.jctc.5c00411\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jctc.5c00411","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Physical Prior Mean-Driven Bayesian Committee Molecular Dynamics (BCMD): From Born–Oppenheimer Dynamics to Curvature-Guided Non-Adiabatic Dynamics
Molecular dynamics (MD), when combined with high-accuracy quantum mechanics for energy and atomic force evaluations, is an indispensable tool extensively used to uncover in-depth atomistic details of chemical processes. However, the computational cost of first-principles predictions can be prohibitive. Here, we introduce a direct dynamics method, Bayesian Committee molecular dynamics (BCMD), which integrates Bayesian learning with a physically informed prior mean to efficiently construct potential energy surfaces (PESs) on the fly. This approach reduces quantum mechanical (QM) evaluations while maintaining high accuracy in nuclear motion propagation. The learned surrogate surfaces enhance the efficiency of the dynamics by guiding further atomic motions. We apply BCMD to both ground-state thermal chemistry and nonadiabatic photochemistry, demonstrating its versatility across different electronic structure regimes. Our approach is highly data-efficient and embeds chemical dynamics knowledge into the learning, enabling domain knowledge-informed, surrogate-based ab initio MD for mechanism exploration, photochemistry, and atmospheric chemistry.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.