{"title":"一种基于免疫沉淀的方法来评估半胱氨酸-106依赖性人蛋白DJ-1在细胞系裂解物中的催化活性。","authors":"Nicolas Mathas , Lucie Larigot , Catherine Laurent , Béatrice Le-Grand , Julien Dairou , Erwan Galardon","doi":"10.1016/j.ab.2025.115910","DOIUrl":null,"url":null,"abstract":"<div><div>DJ-1 is a protein with a wide range of protective cellular functions and implicated in several pathologies, from neurodegenerative Parkinson's disease to cancer. Its physiological functions rely on its ability to form protein complexes and on the highly conserved, redox-sensitive, cysteine residue C106 located in the enzyme's active site. The later plays a key role in the protection against the modification of biomolecules by glycolytic metabolites. However, to date, only an assay based on the highly efficient enzymatic hydrolysis of the reactive intermediate cyclic 3-phosphoglyceric anhydride (cPGA) by DJ-1 can quantify its activity in biological fluids. In this work, we propose a new immunoprecipitation assay using fluorescence to assess DJ-1 catalytic activity in crude cell lysates. This assay efficiently differentiates a wild-type cell line from its DJ-1 knock-out version, and the activity recorded in five human cell line lysates were validated by the good correlation obtained with the activities observed using the cPGA assay. To conclude, this assay is a complementary expansion to the toolbox for studying DJ-1 activity and the associated C106 redox state in cell lysates, as it makes for some of the shortcomings of the previous assay.</div></div>","PeriodicalId":7830,"journal":{"name":"Analytical biochemistry","volume":"705 ","pages":"Article 115910"},"PeriodicalIF":2.5000,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An immunoprecipitation-based assay to assess cysteine-106-dependent catalytic activity of human-protein DJ-1 in cell line lysates\",\"authors\":\"Nicolas Mathas , Lucie Larigot , Catherine Laurent , Béatrice Le-Grand , Julien Dairou , Erwan Galardon\",\"doi\":\"10.1016/j.ab.2025.115910\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>DJ-1 is a protein with a wide range of protective cellular functions and implicated in several pathologies, from neurodegenerative Parkinson's disease to cancer. Its physiological functions rely on its ability to form protein complexes and on the highly conserved, redox-sensitive, cysteine residue C106 located in the enzyme's active site. The later plays a key role in the protection against the modification of biomolecules by glycolytic metabolites. However, to date, only an assay based on the highly efficient enzymatic hydrolysis of the reactive intermediate cyclic 3-phosphoglyceric anhydride (cPGA) by DJ-1 can quantify its activity in biological fluids. In this work, we propose a new immunoprecipitation assay using fluorescence to assess DJ-1 catalytic activity in crude cell lysates. This assay efficiently differentiates a wild-type cell line from its DJ-1 knock-out version, and the activity recorded in five human cell line lysates were validated by the good correlation obtained with the activities observed using the cPGA assay. To conclude, this assay is a complementary expansion to the toolbox for studying DJ-1 activity and the associated C106 redox state in cell lysates, as it makes for some of the shortcomings of the previous assay.</div></div>\",\"PeriodicalId\":7830,\"journal\":{\"name\":\"Analytical biochemistry\",\"volume\":\"705 \",\"pages\":\"Article 115910\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-05-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Analytical biochemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0003269725001484\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Analytical biochemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0003269725001484","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
An immunoprecipitation-based assay to assess cysteine-106-dependent catalytic activity of human-protein DJ-1 in cell line lysates
DJ-1 is a protein with a wide range of protective cellular functions and implicated in several pathologies, from neurodegenerative Parkinson's disease to cancer. Its physiological functions rely on its ability to form protein complexes and on the highly conserved, redox-sensitive, cysteine residue C106 located in the enzyme's active site. The later plays a key role in the protection against the modification of biomolecules by glycolytic metabolites. However, to date, only an assay based on the highly efficient enzymatic hydrolysis of the reactive intermediate cyclic 3-phosphoglyceric anhydride (cPGA) by DJ-1 can quantify its activity in biological fluids. In this work, we propose a new immunoprecipitation assay using fluorescence to assess DJ-1 catalytic activity in crude cell lysates. This assay efficiently differentiates a wild-type cell line from its DJ-1 knock-out version, and the activity recorded in five human cell line lysates were validated by the good correlation obtained with the activities observed using the cPGA assay. To conclude, this assay is a complementary expansion to the toolbox for studying DJ-1 activity and the associated C106 redox state in cell lysates, as it makes for some of the shortcomings of the previous assay.
期刊介绍:
The journal''s title Analytical Biochemistry: Methods in the Biological Sciences declares its broad scope: methods for the basic biological sciences that include biochemistry, molecular genetics, cell biology, proteomics, immunology, bioinformatics and wherever the frontiers of research take the field.
The emphasis is on methods from the strictly analytical to the more preparative that would include novel approaches to protein purification as well as improvements in cell and organ culture. The actual techniques are equally inclusive ranging from aptamers to zymology.
The journal has been particularly active in:
-Analytical techniques for biological molecules-
Aptamer selection and utilization-
Biosensors-
Chromatography-
Cloning, sequencing and mutagenesis-
Electrochemical methods-
Electrophoresis-
Enzyme characterization methods-
Immunological approaches-
Mass spectrometry of proteins and nucleic acids-
Metabolomics-
Nano level techniques-
Optical spectroscopy in all its forms.
The journal is reluctant to include most drug and strictly clinical studies as there are more suitable publication platforms for these types of papers.