Zhijian Yang, Anyu Zeng, Baoxi Yu, Chao Xie, Weiwen Zhu, Hailong Liu, Cheng Gu, Ming Fu
{"title":"P13-516M14.1通过miR-429通过ceRNA网络和直接相互作用调控自噬。","authors":"Zhijian Yang, Anyu Zeng, Baoxi Yu, Chao Xie, Weiwen Zhu, Hailong Liu, Cheng Gu, Ming Fu","doi":"10.1007/s10528-025-11143-x","DOIUrl":null,"url":null,"abstract":"<p><p>Osteoarthritis (OA), characterized by progressive cartilage degradation, is a leading cause of chronic disability in older adults. Although the molecular mechanisms underlying OA remain incompletely understood, emerging evidence suggests that long non-coding RNAs (lncRNAs) play critical regulatory roles. Recently, we identified a previously uncharacterized lncRNA, RP13-516M14.1, that regulates autophagy in OA chondrocytes. In this study, we aimed to elucidate the mechanism of RP13-516M14.1 in OA pathogenesis. The expression of RP13-516M14.1 was assessed in OA cartilage samples. Its biological functions were investigated using RNA sequencing, RT-qPCR, western blotting, LC3 puncta imaging, transmission electron microscopy (TEM), and atomic force microscopy (AFM) nanoindentation. Its interactions with miR-429 were verified by RNA pull-down assays, RNA immunoprecipitation, fluorescence in situ hybridization (FISH), and dual-luciferase reporter assays. RP13-516M14.1 was identified as key regulator of autophagy, maintaining cartilage homeostasis through modulation of miR-429. Knockdown of RP13-516M14.1 exacerbated OA phenotypes both in vitro and in vivo, while its overexpression protected cartilage by promoting autophagy via miR-429/DDIT4 axis. Notebly, RP13-516M14.1 functioned both as a competitive endogenous RNA (ceRNA) sponging miR-429 and directly regulating its expression. Our study highlights the critical role of RP13-516M14.1 in regulating autophagy in chondrocytes and suggests its potential as a therapeutic target for OA treatment.</p>","PeriodicalId":482,"journal":{"name":"Biochemical Genetics","volume":" ","pages":""},"PeriodicalIF":1.6000,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"RP13-516M14.1 Regulates Autophagy Through miR-429 via Both a ceRNA Network and Direct Interaction.\",\"authors\":\"Zhijian Yang, Anyu Zeng, Baoxi Yu, Chao Xie, Weiwen Zhu, Hailong Liu, Cheng Gu, Ming Fu\",\"doi\":\"10.1007/s10528-025-11143-x\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Osteoarthritis (OA), characterized by progressive cartilage degradation, is a leading cause of chronic disability in older adults. Although the molecular mechanisms underlying OA remain incompletely understood, emerging evidence suggests that long non-coding RNAs (lncRNAs) play critical regulatory roles. Recently, we identified a previously uncharacterized lncRNA, RP13-516M14.1, that regulates autophagy in OA chondrocytes. In this study, we aimed to elucidate the mechanism of RP13-516M14.1 in OA pathogenesis. The expression of RP13-516M14.1 was assessed in OA cartilage samples. Its biological functions were investigated using RNA sequencing, RT-qPCR, western blotting, LC3 puncta imaging, transmission electron microscopy (TEM), and atomic force microscopy (AFM) nanoindentation. Its interactions with miR-429 were verified by RNA pull-down assays, RNA immunoprecipitation, fluorescence in situ hybridization (FISH), and dual-luciferase reporter assays. RP13-516M14.1 was identified as key regulator of autophagy, maintaining cartilage homeostasis through modulation of miR-429. Knockdown of RP13-516M14.1 exacerbated OA phenotypes both in vitro and in vivo, while its overexpression protected cartilage by promoting autophagy via miR-429/DDIT4 axis. Notebly, RP13-516M14.1 functioned both as a competitive endogenous RNA (ceRNA) sponging miR-429 and directly regulating its expression. Our study highlights the critical role of RP13-516M14.1 in regulating autophagy in chondrocytes and suggests its potential as a therapeutic target for OA treatment.</p>\",\"PeriodicalId\":482,\"journal\":{\"name\":\"Biochemical Genetics\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":1.6000,\"publicationDate\":\"2025-05-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biochemical Genetics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s10528-025-11143-x\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biochemical Genetics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s10528-025-11143-x","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
RP13-516M14.1 Regulates Autophagy Through miR-429 via Both a ceRNA Network and Direct Interaction.
Osteoarthritis (OA), characterized by progressive cartilage degradation, is a leading cause of chronic disability in older adults. Although the molecular mechanisms underlying OA remain incompletely understood, emerging evidence suggests that long non-coding RNAs (lncRNAs) play critical regulatory roles. Recently, we identified a previously uncharacterized lncRNA, RP13-516M14.1, that regulates autophagy in OA chondrocytes. In this study, we aimed to elucidate the mechanism of RP13-516M14.1 in OA pathogenesis. The expression of RP13-516M14.1 was assessed in OA cartilage samples. Its biological functions were investigated using RNA sequencing, RT-qPCR, western blotting, LC3 puncta imaging, transmission electron microscopy (TEM), and atomic force microscopy (AFM) nanoindentation. Its interactions with miR-429 were verified by RNA pull-down assays, RNA immunoprecipitation, fluorescence in situ hybridization (FISH), and dual-luciferase reporter assays. RP13-516M14.1 was identified as key regulator of autophagy, maintaining cartilage homeostasis through modulation of miR-429. Knockdown of RP13-516M14.1 exacerbated OA phenotypes both in vitro and in vivo, while its overexpression protected cartilage by promoting autophagy via miR-429/DDIT4 axis. Notebly, RP13-516M14.1 functioned both as a competitive endogenous RNA (ceRNA) sponging miR-429 and directly regulating its expression. Our study highlights the critical role of RP13-516M14.1 in regulating autophagy in chondrocytes and suggests its potential as a therapeutic target for OA treatment.
期刊介绍:
Biochemical Genetics welcomes original manuscripts that address and test clear scientific hypotheses, are directed to a broad scientific audience, and clearly contribute to the advancement of the field through the use of sound sampling or experimental design, reliable analytical methodologies and robust statistical analyses.
Although studies focusing on particular regions and target organisms are welcome, it is not the journal’s goal to publish essentially descriptive studies that provide results with narrow applicability, or are based on very small samples or pseudoreplication.
Rather, Biochemical Genetics welcomes review articles that go beyond summarizing previous publications and create added value through the systematic analysis and critique of the current state of knowledge or by conducting meta-analyses.
Methodological articles are also within the scope of Biological Genetics, particularly when new laboratory techniques or computational approaches are fully described and thoroughly compared with the existing benchmark methods.
Biochemical Genetics welcomes articles on the following topics: Genomics; Proteomics; Population genetics; Phylogenetics; Metagenomics; Microbial genetics; Genetics and evolution of wild and cultivated plants; Animal genetics and evolution; Human genetics and evolution; Genetic disorders; Genetic markers of diseases; Gene technology and therapy; Experimental and analytical methods; Statistical and computational methods.