真菌和人工智能的炼金术:响应面法和基于人工神经网络的球粒曲霉生产棘白菌素B的优化。

IF 2.7 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Shaurya Prakash, Nageswar Sahu, Anita Choudhary, Hemlata Kumari, Minakshi, Biswanath Mahanty, Antresh Kumar
{"title":"真菌和人工智能的炼金术:响应面法和基于人工神经网络的球粒曲霉生产棘白菌素B的优化。","authors":"Shaurya Prakash, Nageswar Sahu, Anita Choudhary, Hemlata Kumari, Minakshi, Biswanath Mahanty, Antresh Kumar","doi":"10.1002/bab.2787","DOIUrl":null,"url":null,"abstract":"<p><p>Echinocandin B (ECB) is the precursor of a first-line antifungal, anidulafungin, widely used to treat systemic and invasive fungal infections in nosocomial and community-acquired settings. This potent antifungal is naturally synthesized in Aspergillus nidulans in trace amounts, which can be improved by optimizing growth and physiological conditions. The current study is focused on optimizing the fermentation medium by employing statistical and artificial neural network (ANN)-based model to improve ECB activity in fermentation broth. In the present study, the most significant parameters for ECB activity (i.e., molasses, dextrose, casein, and pH) were identified through the Plackett-Burman design and were further optimized using different statistical models based on central composite design experiments. Process optimization with a reduced quadratic (RQ) model and ANN model (architecture: 4-6-2-1) suggested a 3.64- and 3.03-fold increase in ECB activity, respectively. However, prediction from the RQ model (R<sup>2</sup>: 0.93) could be unreliable when compared to the ANN model (R<sup>2</sup>: 0.99), effectively capturing the complex relationships. The study concludes that the ANN-based predicted model displayed more accuracy and provided optimum levels of the analyzed factors for a 3-fold increase in ECB activity.</p>","PeriodicalId":9274,"journal":{"name":"Biotechnology and applied biochemistry","volume":" ","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2025-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Alchemy of Fungi and AI: Response Surface Methodology and Artificial Neural Network-Based Optimization of Echinocandin B Production in Aspergillus nidulans.\",\"authors\":\"Shaurya Prakash, Nageswar Sahu, Anita Choudhary, Hemlata Kumari, Minakshi, Biswanath Mahanty, Antresh Kumar\",\"doi\":\"10.1002/bab.2787\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Echinocandin B (ECB) is the precursor of a first-line antifungal, anidulafungin, widely used to treat systemic and invasive fungal infections in nosocomial and community-acquired settings. This potent antifungal is naturally synthesized in Aspergillus nidulans in trace amounts, which can be improved by optimizing growth and physiological conditions. The current study is focused on optimizing the fermentation medium by employing statistical and artificial neural network (ANN)-based model to improve ECB activity in fermentation broth. In the present study, the most significant parameters for ECB activity (i.e., molasses, dextrose, casein, and pH) were identified through the Plackett-Burman design and were further optimized using different statistical models based on central composite design experiments. Process optimization with a reduced quadratic (RQ) model and ANN model (architecture: 4-6-2-1) suggested a 3.64- and 3.03-fold increase in ECB activity, respectively. However, prediction from the RQ model (R<sup>2</sup>: 0.93) could be unreliable when compared to the ANN model (R<sup>2</sup>: 0.99), effectively capturing the complex relationships. The study concludes that the ANN-based predicted model displayed more accuracy and provided optimum levels of the analyzed factors for a 3-fold increase in ECB activity.</p>\",\"PeriodicalId\":9274,\"journal\":{\"name\":\"Biotechnology and applied biochemistry\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2025-05-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biotechnology and applied biochemistry\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1002/bab.2787\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biotechnology and applied biochemistry","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1002/bab.2787","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

棘白菌素B (ECB)是一线抗真菌药物anidulafungin的前体,广泛用于治疗医院和社区获得性的全身性和侵袭性真菌感染。这种有效的抗真菌药物是在细粒曲霉中以微量自然合成的,可以通过优化生长和生理条件来改善。目前的研究重点是利用统计模型和基于人工神经网络(ANN)的模型来优化发酵培养基,以提高发酵液中ECB的活性。在本研究中,通过Plackett-Burman设计确定了影响ECB活性的最重要参数(即糖蜜、葡萄糖、酪蛋白和pH),并使用基于中心复合设计实验的不同统计模型进一步优化。过程优化与减少二次(RQ)模型和人工神经网络模型(架构:4-6-2-1)表明,欧洲央行的活动分别增加了3.64倍和3.03倍。然而,与人工神经网络模型(R2: 0.99)相比,RQ模型(R2: 0.93)的预测可能不可靠,有效地捕捉了复杂的关系。该研究得出结论,基于人工神经网络的预测模型显示出更高的准确性,并为欧洲央行活动增加3倍提供了分析因素的最佳水平。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Alchemy of Fungi and AI: Response Surface Methodology and Artificial Neural Network-Based Optimization of Echinocandin B Production in Aspergillus nidulans.

Echinocandin B (ECB) is the precursor of a first-line antifungal, anidulafungin, widely used to treat systemic and invasive fungal infections in nosocomial and community-acquired settings. This potent antifungal is naturally synthesized in Aspergillus nidulans in trace amounts, which can be improved by optimizing growth and physiological conditions. The current study is focused on optimizing the fermentation medium by employing statistical and artificial neural network (ANN)-based model to improve ECB activity in fermentation broth. In the present study, the most significant parameters for ECB activity (i.e., molasses, dextrose, casein, and pH) were identified through the Plackett-Burman design and were further optimized using different statistical models based on central composite design experiments. Process optimization with a reduced quadratic (RQ) model and ANN model (architecture: 4-6-2-1) suggested a 3.64- and 3.03-fold increase in ECB activity, respectively. However, prediction from the RQ model (R2: 0.93) could be unreliable when compared to the ANN model (R2: 0.99), effectively capturing the complex relationships. The study concludes that the ANN-based predicted model displayed more accuracy and provided optimum levels of the analyzed factors for a 3-fold increase in ECB activity.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Biotechnology and applied biochemistry
Biotechnology and applied biochemistry 工程技术-生化与分子生物学
CiteScore
6.00
自引率
7.10%
发文量
117
审稿时长
3 months
期刊介绍: Published since 1979, Biotechnology and Applied Biochemistry is dedicated to the rapid publication of high quality, significant research at the interface between life sciences and their technological exploitation. The Editors will consider papers for publication based on their novelty and impact as well as their contribution to the advancement of medical biotechnology and industrial biotechnology, covering cutting-edge research in synthetic biology, systems biology, metabolic engineering, bioengineering, biomaterials, biosensing, and nano-biotechnology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信