GRANA:一个基于人工智能的工具,用于使用混合智能加速叶绿体颗粒纳米形态分析

IF 6.5 1区 生物学 Q1 PLANT SCIENCES
Alicja Bukat, Marek Bukowicki, Michał Bykowski, Karolina Kuczkowska, Szymon Nowakowski, Anna Śliwińska, Łucja Kowalewska
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引用次数: 0

摘要

颗粒是复杂的叶绿体膜网络的基本结构单位。研究它们的纳米形态对于理解光合效率调控至关重要。在这里,我们展示了GRANA(图形识别和分析纳米结构组件),这是一个人工智能增强的,用户友好的软件工具,可以识别类囊体网络电子显微照片上的颗粒,并生成一组复杂的结构参数。GRANA采用了三个不同架构的人工神经网络,并将它们绑定在一个一键式的工作流中。其输出旨在促进混合智能分析,从大型数据集获得快速可靠的结果。GRANA工具比目前使用的人工方法快100倍以上。作为概念验证,我们已经成功地将GRANA软件应用于不同条件下生长的不同陆地植物物种的不同颗粒结构,表明我们的软件具有广泛的潜在应用前景。GRANA工具支持颗粒纳米形态特征的大规模分析,促进了光合作用导向研究的进展。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
GRANA: An AI-based tool for accelerating chloroplast grana nanomorphology analysis using hybrid intelligence
Grana are fundamental structural units of the intricate chloroplast membrane network. Investigating their nanomorphology is essential for understanding photosynthetic efficiency regulation. Here, we present GRANA (Graphical Recognition and Analysis of Nanostructural Assemblies), an AI-enhanced, user-friendly software tool that recognizes grana on thylakoid network electron micrographs and generates a complex set of their structural parameters. GRANA employs three artificial neural networks of different architectures and binds them in a one-click workflow. Its output is designed to facilitate hybrid intelligence analysis, securing fast and reliable results from large datasets. The GRANA tool is over 100 times faster compared with currently used manual approaches. As a proof of concept, we have successfully applied GRANA software to diverse grana structures across different land plant species grown under various conditions, demonstrating the wide range of potential applications for our software. GRANA tool supports large-scale analysis of grana nanomorphological features, facilitating advancements in photosynthesis-oriented studies.
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来源期刊
Plant Physiology
Plant Physiology 生物-植物科学
CiteScore
12.20
自引率
5.40%
发文量
535
审稿时长
2.3 months
期刊介绍: Plant Physiology® is a distinguished and highly respected journal with a rich history dating back to its establishment in 1926. It stands as a leading international publication in the field of plant biology, covering a comprehensive range of topics from the molecular and structural aspects of plant life to systems biology and ecophysiology. Recognized as the most highly cited journal in plant sciences, Plant Physiology® is a testament to its commitment to excellence and the dissemination of groundbreaking research. As the official publication of the American Society of Plant Biologists, Plant Physiology® upholds rigorous peer-review standards, ensuring that the scientific community receives the highest quality research. The journal releases 12 issues annually, providing a steady stream of new findings and insights to its readership.
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