构建子宫内膜癌人工策划ceRNET,争取临床和医学上的合理性:系统综述。

IF 3.6 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Roberto Piergentili, Stefano Sechi, Lina De Paola, Simona Zaami, Enrico Marinelli
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引用次数: 0

摘要

背景/目的:竞争内源性rna (ceRNA)是竞争与microRNA (miR)结合的分子。通常,ceRNA有两种,一种是蛋白质编码RNA (mRNA),另一种是长链非编码RNA (lncRNA)。miR的作用是抑制mRNA的表达,促进其降解或损害其翻译。lncRNA可以“海绵”miR,从而阻碍其对mRNA的抑制作用。在它们简单的结构中,这三个分子构成了蛋白质表达的调控轴。然而,每个RNA可以与多个靶标相互作用,产生分支和交叉轴,这些轴共同构成了所谓的竞争性内源性RNA网络(ceRNET)。方法:在本系统综述中,我们收集了PubMed上所有实验验证(通过荧光素酶测定)子宫内膜癌(EC)调节轴的可用数据,不包括未使用该测试的作品;结果:该搜索允许选择172个书目来源,并手动构建一系列不同复杂性的ceRNETs,显示已知的轴和推导出的交集。这种搜索的主要限制是高度严格的选择标准,可能导致对所识别的网络复杂性的低估。然而,这项工作不仅使我们能够假设可能的间隙填充,而且还为指导人工智能设置基础,使用适当的提示,通过将EC ceRNET与其他癌症的ceRNET进行比较,来扩展EC ceRNET。此外,这些网络可以用来告知和指导研究EC中特定的(尽管仍未确定)轴,以完成仅部分描述的网络部分,甚至将低复杂性的子网集成到更大的更复杂的子网中。填补现有EC - ceRNET之间的空白将使医生能够假设新的治疗策略,这些策略可能会增强或替代现有的治疗策略。结论:这些ceRNETs使我们能够轻松地可视化远程相互作用,从而帮助我们根据每个患者的分子特征选择最佳治疗方案,从而实现个性化医疗。这将产生更高的效率和更低的毒性水平,这两者不仅对患者的福祉,而且对基于mir的创新治疗和整体个性化医疗的法律、监管和伦理方面都是极其相关的因素。该系统评价已在PROSPERO注册(ID: PROSPERO 2025 CRD420251035222)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Building a Hand-Curated ceRNET for Endometrial Cancer, Striving for Clinical as Well as Medicolegal Soundness: A Systematic Review.

Background/Objectives: Competing endogenous RNAs (ceRNA) are molecules that compete for the binding to a microRNA (miR). Usually, there are two ceRNA, one of which is a protein-coding RNA (mRNA), with the other being a long non-coding RNA (lncRNA). The miR role is to inhibit mRNA expression, either promoting its degradation or impairing its translation. The lncRNA can "sponge" the miR, thus impeding its inhibitory action on the mRNA. In their easier configuration, these three molecules constitute a regulatory axis for protein expression. However, each RNA can interact with multiple targets, creating branched and intersected axes that, all together, constitute what is known as a competing endogenous RNA network (ceRNET). Methods: In this systematic review, we collected all available data from PubMed about experimentally verified (by luciferase assay) regulatory axes in endometrial cancer (EC), excluding works not using this test; Results: This search allowed the selection of 172 bibliographic sources, and manually building a series of ceRNETs of variable complexity showed the known axes and the deduced intersections. The main limitation of this search is the highly stringent selection criteria, possibly leading to an underestimation of the complexity of the networks identified. However, this work allows us not only to hypothesize possible gap fillings but also to set the basis to instruct artificial intelligence, using adequate prompts, to expand the EC ceRNET by comparing it with ceRNETs of other cancers. Moreover, these networks can be used to inform and guide research toward specific, though still unidentified, axes in EC, to complete parts of the network that are only partially described, or even to integrate low complexity subnetworks into larger more complex ones. Filling the gaps among the existing EC ceRNET will allow physicians to hypothesize new therapeutic strategies that may either potentiate or substitute existing ones. Conclusions: These ceRNETs allow us to easily visualize long-distance interactions, thus helping to select the best treatment, depending on the molecular profile of each patient, for personalized medicine. This would yield higher efficiency rates and lower toxicity levels, both of which are extremely relevant factors not only for patients' wellbeing, but also for the legal, regulatory, and ethical aspects of miR-based innovative treatments and personalized medicine as a whole. This systematic review has been registered in PROSPERO (ID: PROSPERO 2025 CRD420251035222).

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来源期刊
Non-Coding RNA
Non-Coding RNA Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
6.70
自引率
4.70%
发文量
74
审稿时长
10 weeks
期刊介绍: Functional studies dealing with identification, structure-function relationships or biological activity of: small regulatory RNAs (miRNAs, siRNAs and piRNAs) associated with the RNA interference pathway small nuclear RNAs, small nucleolar and tRNAs derived small RNAs other types of small RNAs, such as those associated with splice junctions and transcription start sites long non-coding RNAs, including antisense RNAs, long ''intergenic'' RNAs, intronic RNAs and ''enhancer'' RNAs other classes of RNAs such as vault RNAs, scaRNAs, circular RNAs, 7SL RNAs, telomeric and centromeric RNAs regulatory functions of mRNAs and UTR-derived RNAs catalytic and allosteric (riboswitch) RNAs viral, transposon and repeat-derived RNAs bacterial regulatory RNAs, including CRISPR RNAS Analysis of RNA processing, RNA binding proteins, RNA signaling and RNA interaction pathways: DICER AGO, PIWI and PIWI-like proteins other classes of RNA binding and RNA transport proteins RNA interactions with chromatin-modifying complexes RNA interactions with DNA and other RNAs the role of RNA in the formation and function of specialized subnuclear organelles and other aspects of cell biology intercellular and intergenerational RNA signaling RNA processing structure-function relationships in RNA complexes RNA analyses, informatics, tools and technologies: transcriptomic analyses and technologies development of tools and technologies for RNA biology and therapeutics Translational studies involving long and short non-coding RNAs: identification of biomarkers development of new therapies involving microRNAs and other ncRNAs clinical studies involving microRNAs and other ncRNAs.
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