Mio Heinrich , Marcus Rosenblatt , Franz-Georg Wieland , Hans Stigter , Jens Timmer
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On structural and practical identifiability: Current status and update of results
Identifiability of parameters in dynamical systems is a fundamental concept of mathematical modelling in systems biology and systems medicine. Both the structurally inherent identifiability of parameters in models and the practical identifiability of parameters, which arises from insufficient available data, play crucial roles in the development of useful models.
Here, we provide an overview of recent developments in the field of structural identifiability analysis of models based on ordinary differential equations, emphasising its importance for accurate parameter estimation. We extend an existing benchmark study by comparing the methods for structural identifiability analysis with the recently developed StrucID, showing it to be a fast, efficient and intuitive algorithm. Furthermore, this review highlights the challenges in practical identifiability analysis and the need for benchmarking with real-world models using experimental data. The potential benefits of standardising documentation for benchmarking models with experimental data and practical non-identifiabilities are stressed.
期刊介绍:
Current Opinion in Systems Biology is a new systematic review journal that aims to provide specialists with a unique and educational platform to keep up-to-date with the expanding volume of information published in the field of Systems Biology. It publishes polished, concise and timely systematic reviews and opinion articles. In addition to describing recent trends, the authors are encouraged to give their subjective opinion on the topics discussed. As this is such a broad discipline, we have determined themed sections each of which is reviewed once a year. The following areas will be covered by Current Opinion in Systems Biology: -Genomics and Epigenomics -Gene Regulation -Metabolic Networks -Cancer and Systemic Diseases -Mathematical Modelling -Big Data Acquisition and Analysis -Systems Pharmacology and Physiology -Synthetic Biology -Stem Cells, Development, and Differentiation -Systems Biology of Mold Organisms -Systems Immunology and Host-Pathogen Interaction -Systems Ecology and Evolution