有限大小粒子的跟踪算法。

IF 2.4 4区 工程技术 Q2 BIOCHEMICAL RESEARCH METHODS
Biomicrofluidics Pub Date : 2025-05-14 eCollection Date: 2025-05-01 DOI:10.1063/5.0271539
Aryan Mehboudi, Shrawan Singhal, S V Sreenivasan
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引用次数: 0

摘要

颗粒-壁相互作用在细胞分选、颗粒分离、整个流体动力过滤及其衍生物等各种应用中都很重要。然而,当使用当前可用的粒子跟踪算法/包时,准确实现壁面和有限大小的粒子之间的相互作用并不是微不足道的,因为它们通常用于点方向的粒子。在此,我们报告了一种粒子跟踪算法,该算法考虑了有限大小的粒子与附近固体物体之间的相互作用。一个粒子被建模为一组圆周点。在粒子中心轨迹过程中捕获流体-粒子相互作用,通过检查周向点并根据需要应用反射方案来明确模拟粒子与附近固体物体之间的相互作用,以确保固体物体的不可穿透性。我们还报告了一种改进的辅助结构化网格方法来定位宿主细胞,该方法与边界条件方案相结合,可以捕获粒子和固体物体之间的相互作用。作为概念验证,我们通过数值和实验研究了确定性横向位移微流控装置内粒子的运动。结果成功地验证了我们实验中观察到的锯齿和凹凸模式。我们还研究了一种具有挤压流的微流体装置,并通过文献中的实验数据验证了我们的结果。通过在具有8个性能线程的系统上演示几乎8倍的加速,我们的研究表明该算法可以从多线程系统上的并行处理中获益。我们相信所提出的框架可以为精确、方便地设计相关的微流控芯片铺平道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A tracking algorithm for finite-size particles.

Particle-wall interaction is important in various applications such as cell sorting, particle separation, the entire class of hydrodynamic filtration and its derivatives, etc. Yet, accurate implementation of interactions between the wall and finite-size particles is not trivial when working with the currently available particle tracking algorithms/packages as they typically work with point-wise particles. Herein, we report a particle tracking algorithm that takes into account interactions between particles of finite size and nearby solid objects. A particle is modeled as a set of circumferential points. While fluid-particle interactions are captured during the track of particle center, interactions between particles and nearby solid objects are modeled explicitly by examining circumferential points and applying a reflection scheme as needed to ensure impenetrability of solid objects. We also report a modified variant of auxiliary structured grid method to locate hosting cells, which in conjunction with a boundary condition scheme enables the capture of interactions between particles and solid objects. As a proof-of-concept, we numerically and experimentally study the particles' motion within a deterministic lateral displacement microfluidic device. The results successfully demonstrate the zigzag and bump modes observed in our experiments. We also study a microfluidic device with pinched flow numerically and validate our results against experimental data from the literature. By demonstrating an almost 8 × speedup on a system with eight performance threads, our investigations suggest that the algorithm can benefit from parallel processing on multi-thread systems. We believe that the proposed framework can pave the way for designing related microfluidic chips precisely and conveniently.

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来源期刊
Biomicrofluidics
Biomicrofluidics 生物-纳米科技
CiteScore
5.80
自引率
3.10%
发文量
68
审稿时长
1.3 months
期刊介绍: Biomicrofluidics (BMF) is an online-only journal published by AIP Publishing to rapidly disseminate research in fundamental physicochemical mechanisms associated with microfluidic and nanofluidic phenomena. BMF also publishes research in unique microfluidic and nanofluidic techniques for diagnostic, medical, biological, pharmaceutical, environmental, and chemical applications. BMF offers quick publication, multimedia capability, and worldwide circulation among academic, national, and industrial laboratories. With a primary focus on high-quality original research articles, BMF also organizes special sections that help explain and define specific challenges unique to the interdisciplinary field of biomicrofluidics. Microfluidic and nanofluidic actuation (electrokinetics, acoustofluidics, optofluidics, capillary) Liquid Biopsy (microRNA profiling, circulating tumor cell isolation, exosome isolation, circulating tumor DNA quantification) Cell sorting, manipulation, and transfection (di/electrophoresis, magnetic beads, optical traps, electroporation) Molecular Separation and Concentration (isotachophoresis, concentration polarization, di/electrophoresis, magnetic beads, nanoparticles) Cell culture and analysis(single cell assays, stimuli response, stem cell transfection) Genomic and proteomic analysis (rapid gene sequencing, DNA/protein/carbohydrate arrays) Biosensors (immuno-assay, nucleic acid fluorescent assay, colorimetric assay, enzyme amplification, plasmonic and Raman nano-reporter, molecular beacon, FRET, aptamer, nanopore, optical fibers) Biophysical transport and characterization (DNA, single protein, ion channel and membrane dynamics, cell motility and communication mechanisms, electrophysiology, patch clamping). Etc...
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