Kashvi Srivastava, Justin Eilertsen, Victoria Booth, Santiago Schnell
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引用次数: 0
摘要
标准准稳态近似对Michaelis-Menten反应机理的应用是使用奇异摄动理论推导的生化模型还原的教科书范例。然而,确定决定标准准稳态近似有效性的具体生化条件仍然是一项具有挑战性的努力。新出现的研究表明,随着初始酶浓度e 0与米切里斯常数K M之比的减小,标准准稳态近似的准确性会提高。在这项工作中,我们研究了这个比率及其对标准准稳态近似的准确性和有效性的影响,与其他准稳态近似的减少相比。使用常微分方程分析的标准工具,我们表明,虽然e0 / K M提供了标准准稳态近似的渐近精度的指示,但标准准稳态近似的优势依赖于e0与Van Slyke-Cullen常数K的小比例。我们定义了准稳态约简的优势,当它在其他已知的具有重叠有效性条件的约简中提供最高的近似精度时。我们得出结论,e 0 / K的大小提供了标准准稳态近似有效性的最准确度量。
Accuracy Versus Predominance: Reassessing the Validity of the Quasi-Steady-State Approximation.
The application of the standard quasi-steady-state approximation to the Michaelis-Menten reaction mechanism is a textbook example of biochemical model reduction, derived using singular perturbation theory. However, determining the specific biochemical conditions that dictate the validity of the standard quasi-steady-state approximation remains a challenging endeavor. Emerging research suggests that the accuracy of the standard quasi-steady-state approximation improves as the ratio of the initial enzyme concentration, , to the Michaelis constant, , decreases. In this work, we examine this ratio and its implications for the accuracy and validity of the standard quasi-steady-state approximation as compared to other quasi-steady-state reductions in its proximity. Using standard tools from the analysis of ordinary differential equations, we show that while provides an indication of the standard quasi-steady-state approximation's asymptotic accuracy, the standard quasi-steady-state approximation's predominance relies on a small ratio of to the Van Slyke-Cullen constant, K. Here, we define the predominance of a quasi-steady-state reduction when it offers the highest approximation accuracy among other well-known reductions with overlapping validity conditions. We conclude that the magnitude of offers the most accurate measure of the validity of the standard quasi-steady-state approximation.
期刊介绍:
The Bulletin of Mathematical Biology, the official journal of the Society for Mathematical Biology, disseminates original research findings and other information relevant to the interface of biology and the mathematical sciences. Contributions should have relevance to both fields. In order to accommodate the broad scope of new developments, the journal accepts a variety of contributions, including:
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