微波流式细胞仪中用于细胞分类的监督机器学习

IF 4.3 2区 综合性期刊 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC
Carl Ehrett;Matthew Keagle;Benjamin Braun;Nitya Harikumar;Jeffrey Osterberg;Neelima Dahal;Pingshan Wang
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引用次数: 0

摘要

生物细胞的微波传感以其非接触、非侵入性和高灵敏度、高分辨率的潜力而备受关注。然而,缺乏测量特异性一直是一个关键问题。在这项工作中,我们展示了通过经典机器学习(ML)算法分析的单细胞的高度可重复,无偏的微波数据,可以实现有效的细胞分类。用微波流式细胞仪在0.265 ~ 7.65 GHz频率范围内检测酵母细胞,包括酿酒酵母、酵母、白色念珠菌、热带念珠菌、假丝酵母菌和克鲁假丝酵母菌。获得了7941、310、130和200个细胞的4组酵母细胞数据。机器学习模型,包括随机森林、XGBoost、k近邻、决策树和支持向量机(SVM),被训练来分类细胞类型和活力。细胞类型分类的准确率高达86.3%。结果表明,通过细胞成像增加计算机视觉特征有助于提高准确性,机器学习模型的性能取决于其目标细胞特征、应用频率的数量和所选频率的值。进一步的ML分类研究需要标准化的数据采集和更多的细胞数据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Supervised Machine Learning for Cell Classification in Microwave Flow Cytometers
Microwave sensing of biological cells is of great interest for its noncontact, noninvasive nature and high-sensitivity, high-resolution potential. Nevertheless, the lack of measurement specificity has been a critical problem. In this work, we show that highly reproducible, unbiased microwave data of single cells, analyzed by classical machine learning (ML) algorithms, enable effective cell classification. Yeast cells, including Saccharomyces cerevisiae, Saccharomyces pastorianus, Candida albicans, Candida tropicalis, Candida parapsilosis, and Candida krusei, were measured with microwave flow cytometers at frequencies between 0.265 and 7.65 GHz. Four sets of yeast cell data with 7941, 310, 130, and 200 cells were obtained. ML models, including random forest, XGBoost, K-neighbors, decision tree, and support vector machine (SVM), were trained to classify cell types and viability. Accuracies of up to 86.3% were obtained for cell type classification. The results show that the addition of computer vision features via cell imaging helps improve accuracy and that ML model performance depends on its targeted cell traits, the number of frequencies applied, and the values of chosen frequencies. Standardized data acquisition and significantly more cell data are needed for further ML classification investigation.
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来源期刊
IEEE Sensors Journal
IEEE Sensors Journal 工程技术-工程:电子与电气
CiteScore
7.70
自引率
14.00%
发文量
2058
审稿时长
5.2 months
期刊介绍: The fields of interest of the IEEE Sensors Journal are the theory, design , fabrication, manufacturing and applications of devices for sensing and transducing physical, chemical and biological phenomena, with emphasis on the electronics and physics aspect of sensors and integrated sensors-actuators. IEEE Sensors Journal deals with the following: -Sensor Phenomenology, Modelling, and Evaluation -Sensor Materials, Processing, and Fabrication -Chemical and Gas Sensors -Microfluidics and Biosensors -Optical Sensors -Physical Sensors: Temperature, Mechanical, Magnetic, and others -Acoustic and Ultrasonic Sensors -Sensor Packaging -Sensor Networks -Sensor Applications -Sensor Systems: Signals, Processing, and Interfaces -Actuators and Sensor Power Systems -Sensor Signal Processing for high precision and stability (amplification, filtering, linearization, modulation/demodulation) and under harsh conditions (EMC, radiation, humidity, temperature); energy consumption/harvesting -Sensor Data Processing (soft computing with sensor data, e.g., pattern recognition, machine learning, evolutionary computation; sensor data fusion, processing of wave e.g., electromagnetic and acoustic; and non-wave, e.g., chemical, gravity, particle, thermal, radiative and non-radiative sensor data, detection, estimation and classification based on sensor data) -Sensors in Industrial Practice
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