代谢组学数据描述与预测的双加权贝叶斯模型组合。

IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Metabolites Pub Date : 2025-03-21 DOI:10.3390/metabo15040214
Jacopo Troisi, Martina Lombardi, Alessio Trotta, Vera Abenante, Andrea Ingenito, Nicole Palmieri, Sean M Richards, Steven J K Symes, Pierpaolo Cavallo
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引用次数: 0

摘要

背景/目的:本研究提出了一种新的双加权贝叶斯集成机器学习(DW-EML)模型,旨在改进代谢组学数据的分类和预测。该学科涉及生物系统中代谢物的综合分析,为复杂的生物过程和疾病状态提供了有价值的见解。随着代谢组学在人类疾病诊断和精准医疗中发挥越来越重要的作用,迫切需要更强大的人工智能工具,以便在医疗应用中提供更高的可靠性和准确性。提出的DW-EML模型通过在双加权投票方案中集成多个分类器来解决这个问题,该方案根据交叉验证精度和分类置信度分配权重,确保了更可靠的预测框架。方法:该模型应用于来自儿童危重疾病、慢性伤寒携带和卵巢癌早期检测研究的公开数据集。结果:结果表明,DW-EML方法在准确性和预测能力方面优于传统的代谢组学方法,如偏最小二乘判别分析。结论:DW-EML模型是一种很有前途的代谢组学数据分析工具,为诊断和预后应用提供了增强的鲁棒性和可靠性,并可能为个性化和精准医疗的进步做出贡献。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Double-Weighted Bayesian Model Combination for Metabolomics Data Description and Prediction.

Background/objectives: This study presents a novel double-weighted Bayesian Ensemble Machine Learning (DW-EML) model aimed at improving the classification and prediction of metabolomics data. This discipline, which involves the comprehensive analysis of metabolites in a biological system, provides valuable insights into complex biological processes and disease states. As metabolomics assumes an increasingly prominent role in the diagnosis of human diseases and in precision medicine, there is a pressing need for more robust artificial intelligence tools that can offer enhanced reliability and accuracy in medical applications. The proposed DW-EML model addresses this by integrating multiple classifiers within a double-weighted voting scheme, which assigns weights based on the cross-validation accuracy and classification confidence, ensuring a more reliable prediction framework.

Methods: The model was applied to publicly available datasets derived from studies on critical illness in children, chronic typhoid carriage, and early detection of ovarian cancer.

Results: The results demonstrate that the DW-EML approach outperformed methods traditionally used in metabolomics, such as the Partial Least Squares Discriminant Analysis in terms of accuracy and predictive power.

Conclusions: The DW-EML model is a promising tool for metabolomic data analysis, offering enhanced robustness and reliability for diagnostic and prognostic applications and potentially contributing to the advancement of personalized and precision medicine.

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来源期刊
Metabolites
Metabolites Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
5.70
自引率
7.30%
发文量
1070
审稿时长
17.17 days
期刊介绍: Metabolites (ISSN 2218-1989) is an international, peer-reviewed open access journal of metabolism and metabolomics. Metabolites publishes original research articles and review articles in all molecular aspects of metabolism relevant to the fields of metabolomics, metabolic biochemistry, computational and systems biology, biotechnology and medicine, with a particular focus on the biological roles of metabolites and small molecule biomarkers. Metabolites encourages scientists to publish their experimental and theoretical results in as much detail as possible. Therefore, there is no restriction on article length. Sufficient experimental details must be provided to enable the results to be accurately reproduced. Electronic material representing additional figures, materials and methods explanation, or supporting results and evidence can be submitted with the main manuscript as supplementary material.
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