错配尿嘧啶DNA糖基酶(Mug)存在于假结核棒状杆菌基因组中,对尿嘧啶表现出亲和力,但对其他类型的损伤没有亲和力。

IF 1.7 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Genetics and Molecular Biology Pub Date : 2025-04-14 eCollection Date: 2025-01-01 DOI:10.1590/1678-4685-GMB-2023-0353
Bruno Carvalho Resende, Cássio Siqueira Souza Cassiano, Diego Lisboa Rios, Thalia Queiroz Ladeira, Vasco Ariston Carvalho Azevedo, Luciana Lara Dos Santos, Lucía Valenzuela-Pérez, Gonzalo Cabrera, Carlos Renato Machado, Débora de Oliveira Lopes
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引用次数: 0

摘要

假性结核棒状杆菌是干酪性淋巴结炎(CLA)的病原,由于其经济重要性,我们对其基因组进行了测序,以了解其遗传学、致病性和毒力机制。重点放在G/U错配特异性DNA糖基酶(Mug)上,这是一种对DNA碱基切除修复至关重要的酶,在尿嘧啶修复中发挥重要作用,因为假结核杆菌的高G+C含量使其容易发生脱氨事件,强调了Mug的潜在意义。通过计算机和体外分析,对假结核棒状杆菌Mug蛋白(CpMug)进行了表征,以确定其DNA糖基酶活性和病变亲和力。马克杯基因在致病性和非致病性棒状杆菌物种中都被鉴定出来,缺乏可识别的祖先模式。生物信息学分析显示CpMug中保留了必需的尿嘧啶DNA糖基酶催化残基。构建CpMug的三维结构,通过分子对接分析证实其与含有尿嘧啶的DNA及其他病变相互作用。对比分析显示,CpMug对尿嘧啶的催化残基比其他DNA损伤具有更高的亲和力,纯化CpMug的酶分析证实了其尿嘧啶DNA糖基酶活性,而对8-氧鸟嘌呤、四氢呋喃或胸腺嘧啶乙二醇没有活性,这与计算模拟一致。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Mismatch uracil DNA glycosylase (Mug) is maintained in the Corynebacterium pseudotuberculosis genome and exhibits affinity for uracil but not other types of damage.

The genome of Corynebacterium pseudotuberculosis, etiologic agent of Caseous Lymphadenitis (CLA), was sequenced to comprehend its genetics, pathogenicity, and virulence mechanisms due to its economic importance. A focus was placed on the G/U mismatch-specific DNA glycosylase (Mug), an enzyme vital for base excision repair in DNA that can play an important role in uracil repair, since the high G+C content of C. pseudotuberculosis makes it prone to deamination events, accentuating the potential significance of Mug. Through in silico and in vitro analyses, the Corynebacterium pseudotuberculosis Mug protein (CpMug) was characterized to confirm its DNA glycosylase activity and lesion affinity. The mug gene was identified in both pathogenic and non-pathogenic Corynebacterium species, lacking a discernible ancestry pattern. Bioinformatics analyses revealed the preservation of essential uracil DNA glycosylase catalytic residues in CpMug. The 3D structure of CpMug was constructed, and molecular docking analysis demonstrated its interaction with DNA containing uracil and other lesions. Comparative analyses revealed a higher affinity of CpMug's catalytic residues for uracil over other DNA lesions and enzymatic assays with purified CpMug affirmed its uracil DNA glycosylase activity, while it exhibited no activity on 8-oxoguanine, tetrahydrofuran, or thymine glycol, consistent with computational simulations.

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来源期刊
Genetics and Molecular Biology
Genetics and Molecular Biology 生物-生化与分子生物学
CiteScore
4.20
自引率
4.80%
发文量
111
审稿时长
3 months
期刊介绍: Genetics and Molecular Biology (formerly named Revista Brasileira de Genética/Brazilian Journal of Genetics - ISSN 0100-8455) is published by the Sociedade Brasileira de Genética (Brazilian Society of Genetics). The Journal considers contributions that present the results of original research in genetics, evolution and related scientific disciplines. Manuscripts presenting methods and applications only, without an analysis of genetic data, will not be considered.
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