Amit Kohli, Anastasios N Angelopoulos, David McAllister, Esther Whang, Sixian You, Kyrollos Yanny, Federico M Gasparoli, Bo-Jui Chang, Reto Fiolka, Laura Waller
{"title":"环反褶积显微镜:利用对称有效的空间变化像差校正。","authors":"Amit Kohli, Anastasios N Angelopoulos, David McAllister, Esther Whang, Sixian You, Kyrollos Yanny, Federico M Gasparoli, Bo-Jui Chang, Reto Fiolka, Laura Waller","doi":"10.1038/s41592-025-02684-5","DOIUrl":null,"url":null,"abstract":"<p><p>The most ubiquitous form of aberration correction for microscopy is deconvolution; however, deconvolution relies on the assumption that the system's point spread function is the same across the entire field of view. This assumption is often inadequate, but space-variant deblurring techniques generally require impractical amounts of calibration and computation. We present an imaging pipeline that leverages symmetry to provide simple and fast spatially varying deblurring. Our ring deconvolution microscopy method utilizes the rotational symmetry of most microscopes and cameras, and naturally extends to sheet deconvolution in the case of lateral symmetry. We derive theory and algorithms for ring deconvolution microscopy and propose a neural network based on Seidel aberration coefficients as a fast alternative. We demonstrate improvements in speed and image quality as compared to standard deconvolution and existing spatially varying deblurring across a diverse range of microscope modalities, including miniature microscopy, multicolor fluorescence microscopy, multimode fiber micro-endoscopy and light-sheet fluorescence microscopy. Our approach enables near-isotropic, subcellular resolution in each of these applications.</p>","PeriodicalId":18981,"journal":{"name":"Nature Methods","volume":" ","pages":"1311-1320"},"PeriodicalIF":36.1000,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12165846/pdf/","citationCount":"0","resultStr":"{\"title\":\"Ring deconvolution microscopy: exploiting symmetry for efficient spatially varying aberration correction.\",\"authors\":\"Amit Kohli, Anastasios N Angelopoulos, David McAllister, Esther Whang, Sixian You, Kyrollos Yanny, Federico M Gasparoli, Bo-Jui Chang, Reto Fiolka, Laura Waller\",\"doi\":\"10.1038/s41592-025-02684-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The most ubiquitous form of aberration correction for microscopy is deconvolution; however, deconvolution relies on the assumption that the system's point spread function is the same across the entire field of view. This assumption is often inadequate, but space-variant deblurring techniques generally require impractical amounts of calibration and computation. We present an imaging pipeline that leverages symmetry to provide simple and fast spatially varying deblurring. Our ring deconvolution microscopy method utilizes the rotational symmetry of most microscopes and cameras, and naturally extends to sheet deconvolution in the case of lateral symmetry. We derive theory and algorithms for ring deconvolution microscopy and propose a neural network based on Seidel aberration coefficients as a fast alternative. We demonstrate improvements in speed and image quality as compared to standard deconvolution and existing spatially varying deblurring across a diverse range of microscope modalities, including miniature microscopy, multicolor fluorescence microscopy, multimode fiber micro-endoscopy and light-sheet fluorescence microscopy. Our approach enables near-isotropic, subcellular resolution in each of these applications.</p>\",\"PeriodicalId\":18981,\"journal\":{\"name\":\"Nature Methods\",\"volume\":\" \",\"pages\":\"1311-1320\"},\"PeriodicalIF\":36.1000,\"publicationDate\":\"2025-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12165846/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Nature Methods\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1038/s41592-025-02684-5\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/4/29 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Nature Methods","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1038/s41592-025-02684-5","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/4/29 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Ring deconvolution microscopy: exploiting symmetry for efficient spatially varying aberration correction.
The most ubiquitous form of aberration correction for microscopy is deconvolution; however, deconvolution relies on the assumption that the system's point spread function is the same across the entire field of view. This assumption is often inadequate, but space-variant deblurring techniques generally require impractical amounts of calibration and computation. We present an imaging pipeline that leverages symmetry to provide simple and fast spatially varying deblurring. Our ring deconvolution microscopy method utilizes the rotational symmetry of most microscopes and cameras, and naturally extends to sheet deconvolution in the case of lateral symmetry. We derive theory and algorithms for ring deconvolution microscopy and propose a neural network based on Seidel aberration coefficients as a fast alternative. We demonstrate improvements in speed and image quality as compared to standard deconvolution and existing spatially varying deblurring across a diverse range of microscope modalities, including miniature microscopy, multicolor fluorescence microscopy, multimode fiber micro-endoscopy and light-sheet fluorescence microscopy. Our approach enables near-isotropic, subcellular resolution in each of these applications.
期刊介绍:
Nature Methods is a monthly journal that focuses on publishing innovative methods and substantial enhancements to fundamental life sciences research techniques. Geared towards a diverse, interdisciplinary readership of researchers in academia and industry engaged in laboratory work, the journal offers new tools for research and emphasizes the immediate practical significance of the featured work. It publishes primary research papers and reviews recent technical and methodological advancements, with a particular interest in primary methods papers relevant to the biological and biomedical sciences. This includes methods rooted in chemistry with practical applications for studying biological problems.