{"title":"基于独立成分分析的叶绿素a荧光测定水稻干旱胁迫水平","authors":"Q Xia, H Tang, J L Tan, S I Allakhverdiev, Y Guo","doi":"10.32615/ps.2025.009","DOIUrl":null,"url":null,"abstract":"<p><p>Sensing rice drought stress is crucial for agriculture, and chlorophyll <i>a</i> fluorescence (ChlF) is often used. However, existing techniques usually rely on defined feature points on the OJIP induction curve, which ignores the rich physiological information in the entire curve. Independent Component Analysis (ICA) can effectively preserve independent features, making it suitable for capturing drought-induced physiological changes. This study applies ICA and Support Vector Machine (SVM) to classify drought levels using the entire OJIP curve. The results show that the 20-dimensional ChlF features obtained by ICA provide superior classification performance, with <i>Accuracy</i>, <i>Precision</i>, <i>Recall</i>, <i>F1</i>-<i>score</i>, and <i>Kappa</i> coefficient improving by 18.15%, 0.18, 0.17, 0.17, and 0.22, respectively, compared to the entire curve. This work provides a rice drought stress levels determination method and highlights the importance of applying dimension reduction methods for ChlF analysis. This work is expected to enhance stress detection using ChlF.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"73-80"},"PeriodicalIF":2.1000,"publicationDate":"2025-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012420/pdf/","citationCount":"0","resultStr":"{\"title\":\"Determination of rice (<i>Oryza sativa</i> L.) drought stress levels based on chlorophyll <i>a</i> fluorescence through independent component analysis.\",\"authors\":\"Q Xia, H Tang, J L Tan, S I Allakhverdiev, Y Guo\",\"doi\":\"10.32615/ps.2025.009\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Sensing rice drought stress is crucial for agriculture, and chlorophyll <i>a</i> fluorescence (ChlF) is often used. However, existing techniques usually rely on defined feature points on the OJIP induction curve, which ignores the rich physiological information in the entire curve. Independent Component Analysis (ICA) can effectively preserve independent features, making it suitable for capturing drought-induced physiological changes. This study applies ICA and Support Vector Machine (SVM) to classify drought levels using the entire OJIP curve. The results show that the 20-dimensional ChlF features obtained by ICA provide superior classification performance, with <i>Accuracy</i>, <i>Precision</i>, <i>Recall</i>, <i>F1</i>-<i>score</i>, and <i>Kappa</i> coefficient improving by 18.15%, 0.18, 0.17, 0.17, and 0.22, respectively, compared to the entire curve. This work provides a rice drought stress levels determination method and highlights the importance of applying dimension reduction methods for ChlF analysis. This work is expected to enhance stress detection using ChlF.</p>\",\"PeriodicalId\":20157,\"journal\":{\"name\":\"Photosynthetica\",\"volume\":\"63 1\",\"pages\":\"73-80\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2025-03-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012420/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Photosynthetica\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.32615/ps.2025.009\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Photosynthetica","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.32615/ps.2025.009","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
Determination of rice (Oryza sativa L.) drought stress levels based on chlorophyll a fluorescence through independent component analysis.
Sensing rice drought stress is crucial for agriculture, and chlorophyll a fluorescence (ChlF) is often used. However, existing techniques usually rely on defined feature points on the OJIP induction curve, which ignores the rich physiological information in the entire curve. Independent Component Analysis (ICA) can effectively preserve independent features, making it suitable for capturing drought-induced physiological changes. This study applies ICA and Support Vector Machine (SVM) to classify drought levels using the entire OJIP curve. The results show that the 20-dimensional ChlF features obtained by ICA provide superior classification performance, with Accuracy, Precision, Recall, F1-score, and Kappa coefficient improving by 18.15%, 0.18, 0.17, 0.17, and 0.22, respectively, compared to the entire curve. This work provides a rice drought stress levels determination method and highlights the importance of applying dimension reduction methods for ChlF analysis. This work is expected to enhance stress detection using ChlF.
期刊介绍:
Photosynthetica publishes original scientific papers and brief communications, reviews on specialized topics, book reviews and announcements and reports covering wide range of photosynthesis research or research including photosynthetic parameters of both experimental and theoretical nature and dealing with physiology, biophysics, biochemistry, molecular biology on one side and leaf optics, stress physiology and ecology of photosynthesis on the other side.
The language of journal is English (British or American). Papers should not be published or under consideration for publication elsewhere.