毛蟹微细菌和毛蟹农球菌:来自红雪蟹的新型肠道细菌。

IF 2.5 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Dhiraj Kumar Chaudhary, Sang-Eon Kim, Hye-Jin Park, Kyoung-Ho Kim
{"title":"毛蟹微细菌和毛蟹农球菌:来自红雪蟹的新型肠道细菌。","authors":"Dhiraj Kumar Chaudhary, Sang-Eon Kim, Hye-Jin Park, Kyoung-Ho Kim","doi":"10.4014/jmb.2412.12044","DOIUrl":null,"url":null,"abstract":"<p><p>Two yellow-coloured, Gram-stain-positive, oxidase-negative, aerobic, non-motile, and rod-shaped strains, labelled as ProA8<sup>T</sup> and ProA11<sup>T</sup>, were isolated from digestive tract of red snow crab (<i>Chionoecetes japonicus</i>). Strain ProA8<sup>T</sup> grow at temperature range of 15-35°C, while strain ProA11<sup>T</sup> grow at temperature range of 15-40°C. Phylogenetic and 16S rRNA gene sequence analysis revealed that strains ProA8<sup>T</sup> and ProA11<sup>T</sup> belonged to the genera <i>Microbacterium</i> and <i>Agrococcus</i>, respectively. Strain ProA8<sup>T</sup> was closely affiliated with <i>Microbacterium yannicii</i> JCM 18959<sup>T</sup> (98.8%) and strain ProA11<sup>T</sup> was most closely related to <i>Agrococcus baldri</i> IAM 15147<sup>T</sup> (98.9%). The genome sizes of ProA8<sup>T</sup> and ProA11<sup>T</sup> were 4,373,776 bp and 2,665,899 bp, with DNA G+C contents of 70.5% and 70.1%, respectively. The genomic relatedness values of ProA8<sup>T</sup> and ProA11<sup>T</sup> with their respective reference strains were <32.0% (for digital DNA-DNA hybridization) and <87.0% (for average nucleotide identity). Biosynthetic gene analysis showed the presence of genes for resorcinol production in ProA8<sup>T</sup> and ectoine biosynthesis in ProA11<sup>T</sup>, indicating ecological and biotechnological significance. Virulence analyses determined that strains ProA8<sup>T</sup> and ProA11<sup>T</sup> were non-pathogenic to humans, highlighting their safe application in biotechnological field. The major cellular fatty acids reported in ProA8<sup>T</sup> and ProA11<sup>T</sup> were anteiso-C<sub>15:0</sub>, iso-C<sub>16:0</sub>, and anteiso-C<sub>17:0</sub>. Overall, the polyphasic taxonomic data suggest that both strains ProA8<sup>T</sup> and ProA11<sup>T</sup> represent two novel species within the genera <i>Microbacterium</i> and <i>Agrococcus</i>, respectively. Accordingly, we propose the names <i>Microbacterium chionoecetis</i> sp. nov., with the type strain ProA8<sup>T</sup> (= KCTC 49861<sup>T</sup> = JCM 37392<sup>T</sup>) and <i>Agrococcus chionoecetis</i> sp. nov., with the type strain ProA11<sup>T</sup> (= KCTC 49958<sup>T</sup> = JCM 37393<sup>T</sup>).</p>","PeriodicalId":16481,"journal":{"name":"Journal of microbiology and biotechnology","volume":"35 ","pages":"e2412044"},"PeriodicalIF":2.5000,"publicationDate":"2025-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12089952/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Microbacterium chionoecetis</i> sp. nov. and <i>Agrococcus chionoecetis</i> sp. nov.: Novel Gut Bacteria from Red Snow Crab.\",\"authors\":\"Dhiraj Kumar Chaudhary, Sang-Eon Kim, Hye-Jin Park, Kyoung-Ho Kim\",\"doi\":\"10.4014/jmb.2412.12044\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two yellow-coloured, Gram-stain-positive, oxidase-negative, aerobic, non-motile, and rod-shaped strains, labelled as ProA8<sup>T</sup> and ProA11<sup>T</sup>, were isolated from digestive tract of red snow crab (<i>Chionoecetes japonicus</i>). Strain ProA8<sup>T</sup> grow at temperature range of 15-35°C, while strain ProA11<sup>T</sup> grow at temperature range of 15-40°C. Phylogenetic and 16S rRNA gene sequence analysis revealed that strains ProA8<sup>T</sup> and ProA11<sup>T</sup> belonged to the genera <i>Microbacterium</i> and <i>Agrococcus</i>, respectively. Strain ProA8<sup>T</sup> was closely affiliated with <i>Microbacterium yannicii</i> JCM 18959<sup>T</sup> (98.8%) and strain ProA11<sup>T</sup> was most closely related to <i>Agrococcus baldri</i> IAM 15147<sup>T</sup> (98.9%). The genome sizes of ProA8<sup>T</sup> and ProA11<sup>T</sup> were 4,373,776 bp and 2,665,899 bp, with DNA G+C contents of 70.5% and 70.1%, respectively. The genomic relatedness values of ProA8<sup>T</sup> and ProA11<sup>T</sup> with their respective reference strains were <32.0% (for digital DNA-DNA hybridization) and <87.0% (for average nucleotide identity). Biosynthetic gene analysis showed the presence of genes for resorcinol production in ProA8<sup>T</sup> and ectoine biosynthesis in ProA11<sup>T</sup>, indicating ecological and biotechnological significance. Virulence analyses determined that strains ProA8<sup>T</sup> and ProA11<sup>T</sup> were non-pathogenic to humans, highlighting their safe application in biotechnological field. The major cellular fatty acids reported in ProA8<sup>T</sup> and ProA11<sup>T</sup> were anteiso-C<sub>15:0</sub>, iso-C<sub>16:0</sub>, and anteiso-C<sub>17:0</sub>. Overall, the polyphasic taxonomic data suggest that both strains ProA8<sup>T</sup> and ProA11<sup>T</sup> represent two novel species within the genera <i>Microbacterium</i> and <i>Agrococcus</i>, respectively. Accordingly, we propose the names <i>Microbacterium chionoecetis</i> sp. nov., with the type strain ProA8<sup>T</sup> (= KCTC 49861<sup>T</sup> = JCM 37392<sup>T</sup>) and <i>Agrococcus chionoecetis</i> sp. nov., with the type strain ProA11<sup>T</sup> (= KCTC 49958<sup>T</sup> = JCM 37393<sup>T</sup>).</p>\",\"PeriodicalId\":16481,\"journal\":{\"name\":\"Journal of microbiology and biotechnology\",\"volume\":\"35 \",\"pages\":\"e2412044\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-04-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12089952/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of microbiology and biotechnology\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.4014/jmb.2412.12044\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of microbiology and biotechnology","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.4014/jmb.2412.12044","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

从赤雪蟹(Chionoecetes japonicus)消化道中分离到两株黄色、革兰氏染色阳性、氧化酶阴性、需氧、无运动、杆状的菌株,分别标记为ProA8T和ProA11T。菌株ProA8T的生长温度范围为15-35℃,菌株ProA11T的生长温度范围为15-40℃。系统发育和16S rRNA基因序列分析表明,菌株ProA8T和ProA11T分别属于微杆菌属和农球菌属。菌株ProA8T与yanannicii Microbacterium JCM 18959T亲缘关系密切(98.8%),菌株ProA11T与baldri Agrococcus IAM 15147T亲缘关系最密切(98.9%)。ProA8T和ProA11T基因组大小分别为4,373,776 bp和2,665,899 bp, DNA G+C含量分别为70.5%和70.1%。ProA8T和ProA11T与各自参考菌株的基因组亲缘值分别为T和异托因在ProA11T中生物合成,具有重要的生态和生物技术意义。毒力分析结果表明,菌株ProA8T和ProA11T对人类无致病性,表明它们在生物技术领域的应用是安全的。ProA8T和ProA11T的主要细胞脂肪酸为anteiso-C15:0、iso-C16:0和anteiso-C17:0。总体而言,多相分类数据表明菌株ProA8T和ProA11T分别代表Microbacterium和Agrococcus属中的两个新种。据此,我们提出了chionoecetis sp. nov.的命名,其类型菌株为ProA8T (= KCTC 49861T = JCM 37392T); chionoecetis sp. nov.的命名,其类型菌株为ProA11T (= KCTC 49958T = JCM 37393T)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Microbacterium chionoecetis sp. nov. and Agrococcus chionoecetis sp. nov.: Novel Gut Bacteria from Red Snow Crab.

Two yellow-coloured, Gram-stain-positive, oxidase-negative, aerobic, non-motile, and rod-shaped strains, labelled as ProA8T and ProA11T, were isolated from digestive tract of red snow crab (Chionoecetes japonicus). Strain ProA8T grow at temperature range of 15-35°C, while strain ProA11T grow at temperature range of 15-40°C. Phylogenetic and 16S rRNA gene sequence analysis revealed that strains ProA8T and ProA11T belonged to the genera Microbacterium and Agrococcus, respectively. Strain ProA8T was closely affiliated with Microbacterium yannicii JCM 18959T (98.8%) and strain ProA11T was most closely related to Agrococcus baldri IAM 15147T (98.9%). The genome sizes of ProA8T and ProA11T were 4,373,776 bp and 2,665,899 bp, with DNA G+C contents of 70.5% and 70.1%, respectively. The genomic relatedness values of ProA8T and ProA11T with their respective reference strains were <32.0% (for digital DNA-DNA hybridization) and <87.0% (for average nucleotide identity). Biosynthetic gene analysis showed the presence of genes for resorcinol production in ProA8T and ectoine biosynthesis in ProA11T, indicating ecological and biotechnological significance. Virulence analyses determined that strains ProA8T and ProA11T were non-pathogenic to humans, highlighting their safe application in biotechnological field. The major cellular fatty acids reported in ProA8T and ProA11T were anteiso-C15:0, iso-C16:0, and anteiso-C17:0. Overall, the polyphasic taxonomic data suggest that both strains ProA8T and ProA11T represent two novel species within the genera Microbacterium and Agrococcus, respectively. Accordingly, we propose the names Microbacterium chionoecetis sp. nov., with the type strain ProA8T (= KCTC 49861T = JCM 37392T) and Agrococcus chionoecetis sp. nov., with the type strain ProA11T (= KCTC 49958T = JCM 37393T).

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of microbiology and biotechnology
Journal of microbiology and biotechnology BIOTECHNOLOGY & APPLIED MICROBIOLOGY-MICROBIOLOGY
CiteScore
5.50
自引率
3.60%
发文量
151
审稿时长
2 months
期刊介绍: The Journal of Microbiology and Biotechnology (JMB) is a monthly international journal devoted to the advancement and dissemination of scientific knowledge pertaining to microbiology, biotechnology, and related academic disciplines. It covers various scientific and technological aspects of Molecular and Cellular Microbiology, Environmental Microbiology and Biotechnology, Food Biotechnology, and Biotechnology and Bioengineering (subcategories are listed below). Launched in March 1991, the JMB is published by the Korean Society for Microbiology and Biotechnology (KMB) and distributed worldwide.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信