通过生物信息学分析鉴定原发性开角型青光眼中凋亡相关基因。

IF 1.5 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Dongmei Hong
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引用次数: 0

摘要

本研究旨在检测原发性开角型青光眼(POAG)中铁中毒相关基因,为潜在的疾病机制和潜在的治疗方法提供新的见解。使用生物信息学分析鉴定POAG和对照组之间的差异表达基因(DEGs),随后与铁下垂基因集相交以分离铁下垂相关的DEGs (Ferr DEGs)。通过基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析来检验它们的生物学功能。通过蛋白相互作用(PPI)网络和friend分析鉴定核心基因。采用受试者工作特征(ROC)曲线分析评估核心铁蛋白DEGs的诊断潜力,采用CIBERSORT算法检测免疫细胞浸润。此外,Spearman相关分析用于检查鉴定基因与免疫细胞群之间的关系。共鉴定出25个Ferr DEGs,其中DDIT4、GDF15、NAMPT、HBA1和IGFBP7为关键核心基因。ROC分析表明,这些基因具有较高的诊断准确性,AUC为0.7。与对照组相比,POAG组织中记忆B细胞和巨噬细胞m2的浸润水平显著升高。值得注意的是,核心基因揭示了与各种免疫细胞类型的显著相关性。我们的研究结果强调了衰铁相关基因在POAG发病机制中的作用,并强调了它们作为诊断生物标志物和治疗靶点的潜力。未来的研究应侧重于在临床环境中验证这些发现,并探索在POAG管理中对铁下垂的治疗调节。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of Ferroptosis-Associated Genes in Primary Open-Angle Glaucoma through Bioinformatics Analysis.

This study aims to examine ferroptosis-associated genes in primary open-angle glaucoma (POAG) and offer new insights into the underlying disease mechanisms and potential therapeutic approaches. Differentially expressed genes (DEGs) between the POAG and control groups were identified using bioinformatics analysis and subsequently intersected with a ferroptosis gene set to isolate ferroptosis-related DEGs (Ferr DEGs). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were conducted to examine their biological functions. Core genes were identified through protein-protein interaction (PPI) network and Friends analysis. The diagnostic potential of core Ferr DEGs was assessed using receiver operating characteristic (ROC) curve analysis, while immune cell infiltration was examined using the CIBERSORT algorithm. Additionally, Spearman correlation analysis was used to examine the relationships between the identified genes and immune cell populations. A total of 25 Ferr DEGs were identified, with DDIT4, GDF15, NAMPT, HBA1, and IGFBP7 recognized as key core genes. ROC analysis demonstrated that these genes exhibited high diagnostic accuracy, with an AUC > 0.7. Additionally, the infiltration levels of memory B cells and macrophage_M2 were significantly elevated in POAG tissues compared to the control group. Notably, the core genes revealed significant correlations with various immune cell types. Our findings underscore the involvement of ferroptosis-related genes in POAG pathogenesis and highlight their potential as diagnostic biomarkers and therapeutic targets. Future research should focus on validating these findings in clinical settings and exploring the therapeutic modulation of ferroptosis in POAG management.

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来源期刊
Critical Reviews in Eukaryotic Gene Expression
Critical Reviews in Eukaryotic Gene Expression 生物-生物工程与应用微生物
CiteScore
2.70
自引率
0.00%
发文量
67
审稿时长
1 months
期刊介绍: Critical ReviewsTM in Eukaryotic Gene Expression presents timely concepts and experimental approaches that are contributing to rapid advances in our mechanistic understanding of gene regulation, organization, and structure within the contexts of biological control and the diagnosis/treatment of disease. The journal provides in-depth critical reviews, on well-defined topics of immediate interest, written by recognized specialists in the field. Extensive literature citations provide a comprehensive information resource. Reviews are developed from an historical perspective and suggest directions that can be anticipated. Strengths as well as limitations of methodologies and experimental strategies are considered.
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