低温电子断层成像中社区元数据标准的案例。

IF 3.4 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
William Wan
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引用次数: 0

摘要

在过去的十年中,低温电子显微镜和单粒子分析(SPA)迅速成为结构生物学的关键方法。特别是,增加使用设备和简化软件的机会使新用户能够成功地执行SPA项目。与此同时,低温电子断层扫描技术(cryo-ET)也取得了很大的技术进步,最显著的是细胞低温电子断层扫描技术。虽然仍然存在许多挑战,但硬件和自动化的发展使细胞冷冻et标本制备和数据收集比以往任何时候都更容易获得。cryo-ET软件开发人员的领域也在不断增长,但是使用cryo-ET可以追求的生物标本和科学目标种类繁多,因此很难开发类似于SPA的处理工作流程;这成为新用户进入的主要障碍。从这个角度来看,我认为标准化元数据的开发可以在减少此类障碍方面发挥关键作用,并允许建立一个生态系统,使新用户能够进入该领域,同时保留处理方法的多样性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A case for community metadata standards in cryo-electron tomography.

In the past decade, cryo-electron microscopy and single particle analysis (SPA) have quickly become key methods in structural biology. In particular, increased access to equipment and streamlined software has enabled new users to successfully carry out SPA projects. At the same time, cryo-electron tomography (cryo-ET) has also made great technical strides, most notably with cellular cryo-ET. While many challenges remain, developments in hardware and automation have made cellular cryo-ET specimen preparation and data collection more accessible than ever. There is also a growing field of cryo-ET software developers, but the wide variety of biological specimens and scientific goals that can be pursued using cryo-ET makes it difficult to develop processing workflows analogous to those in SPA; this becomes a major barrier to entry for new users. In this perspective, I make a case that the development of standardized metadata can play a key role in reducing such barriers and allow for an ecosystem that enables new users to enter the field while retaining a diversity of processing approaches.

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来源期刊
CiteScore
7.70
自引率
0.00%
发文量
94
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