随时间变化的随机方法和部分集成过程来模拟肌动蛋白-肌球蛋白相互作用和停留时间。

IF 2.6 4区 工程技术 Q1 Mathematics
Nikolai Leonenko, Enrica Pirozzi
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引用次数: 0

摘要

我们提出了肌凝蛋白头和肌动蛋白丝之间相互作用的两个随机模型,这是触发肌肉收缩的物理化学机制,但尚未完全理解。我们利用分数阶微积分方法来构造具有$内存的模型的非马尔可夫过程。提出了两个模型的时变过程和部分积分过程。每一种都以不同的方式包含了记忆效应。我们从理论的角度和模拟的样本路径来描述这些特征。平均函数和协方差提供,考虑恒定和时间相关的倾斜力,其中包括外部负载的影响。这种现象的停留时间的研究是通过密度估计的第一次出口时间(FET)的过程从一个条带;这模仿了肌凝蛋白头部由于与肌动蛋白相互作用而在电位阱外滑动运动时的台阶次数。对于时变扩散过程,我们给出了场效应管的概率密度函数方程。给出并执行了两种仿真算法的方案。给出了一些数值和仿真结果并进行了讨论。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The time-changed stochastic approach and fractionally integrated processes to model the actin-myosin interaction and dwell times.

We propose two stochastic models for the interaction between the myosin head and the actin filament, the physio-chemical mechanism triggering muscle contraction and that is not yet completely understood. We make use of the fractional calculus approach with the purpose of constructing non-Markov processes for models with $ memory. $ A time-changed process and a fractionally integrated process are proposed for the two models. Each of these includes memory effects in a different way. We describe such features from a theoretical point of view and with simulations of sample paths. Mean functions and covariances are provided, considering constant and time-dependent tilting forces by which effects of external loads are included. The investigation of the dwell time of such phenomenon is carried out by means of density estimations of the first exit time (FET) of the processes from a strip; this mimics the times of the Steps of the myosin head during the sliding movement outside a potential well due to the interaction with actin. For the case of time-changed diffusion process, we specify an equation for the probability density function of the FET from a strip. The schemes of two simulation algorithms are provided and performed. Some numerical and simulation results are given and discussed.

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来源期刊
Mathematical Biosciences and Engineering
Mathematical Biosciences and Engineering 工程技术-数学跨学科应用
CiteScore
3.90
自引率
7.70%
发文量
586
审稿时长
>12 weeks
期刊介绍: Mathematical Biosciences and Engineering (MBE) is an interdisciplinary Open Access journal promoting cutting-edge research, technology transfer and knowledge translation about complex data and information processing. MBE publishes Research articles (long and original research); Communications (short and novel research); Expository papers; Technology Transfer and Knowledge Translation reports (description of new technologies and products); Announcements and Industrial Progress and News (announcements and even advertisement, including major conferences).
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