{"title":"随时间变化的随机方法和部分集成过程来模拟肌动蛋白-肌球蛋白相互作用和停留时间。","authors":"Nikolai Leonenko, Enrica Pirozzi","doi":"10.3934/mbe.2025037","DOIUrl":null,"url":null,"abstract":"<p><p>We propose two stochastic models for the interaction between the myosin head and the actin filament, the physio-chemical mechanism triggering muscle contraction and that is not yet completely understood. We make use of the fractional calculus approach with the purpose of constructing non-Markov processes for models with $ memory. $ A time-changed process and a fractionally integrated process are proposed for the two models. Each of these includes memory effects in a different way. We describe such features from a theoretical point of view and with simulations of sample paths. Mean functions and covariances are provided, considering constant and time-dependent tilting forces by which effects of external loads are included. The investigation of the dwell time of such phenomenon is carried out by means of density estimations of the first exit time (FET) of the processes from a strip; this mimics the times of the Steps of the myosin head during the sliding movement outside a potential well due to the interaction with actin. For the case of time-changed diffusion process, we specify an equation for the probability density function of the FET from a strip. The schemes of two simulation algorithms are provided and performed. Some numerical and simulation results are given and discussed.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"22 4","pages":"1019-1054"},"PeriodicalIF":2.6000,"publicationDate":"2025-03-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The time-changed stochastic approach and fractionally integrated processes to model the actin-myosin interaction and dwell times.\",\"authors\":\"Nikolai Leonenko, Enrica Pirozzi\",\"doi\":\"10.3934/mbe.2025037\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We propose two stochastic models for the interaction between the myosin head and the actin filament, the physio-chemical mechanism triggering muscle contraction and that is not yet completely understood. We make use of the fractional calculus approach with the purpose of constructing non-Markov processes for models with $ memory. $ A time-changed process and a fractionally integrated process are proposed for the two models. Each of these includes memory effects in a different way. We describe such features from a theoretical point of view and with simulations of sample paths. Mean functions and covariances are provided, considering constant and time-dependent tilting forces by which effects of external loads are included. The investigation of the dwell time of such phenomenon is carried out by means of density estimations of the first exit time (FET) of the processes from a strip; this mimics the times of the Steps of the myosin head during the sliding movement outside a potential well due to the interaction with actin. For the case of time-changed diffusion process, we specify an equation for the probability density function of the FET from a strip. The schemes of two simulation algorithms are provided and performed. Some numerical and simulation results are given and discussed.</p>\",\"PeriodicalId\":49870,\"journal\":{\"name\":\"Mathematical Biosciences and Engineering\",\"volume\":\"22 4\",\"pages\":\"1019-1054\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2025-03-17\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mathematical Biosciences and Engineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.3934/mbe.2025037\",\"RegionNum\":4,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Mathematics\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mathematical Biosciences and Engineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.3934/mbe.2025037","RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Mathematics","Score":null,"Total":0}
The time-changed stochastic approach and fractionally integrated processes to model the actin-myosin interaction and dwell times.
We propose two stochastic models for the interaction between the myosin head and the actin filament, the physio-chemical mechanism triggering muscle contraction and that is not yet completely understood. We make use of the fractional calculus approach with the purpose of constructing non-Markov processes for models with $ memory. $ A time-changed process and a fractionally integrated process are proposed for the two models. Each of these includes memory effects in a different way. We describe such features from a theoretical point of view and with simulations of sample paths. Mean functions and covariances are provided, considering constant and time-dependent tilting forces by which effects of external loads are included. The investigation of the dwell time of such phenomenon is carried out by means of density estimations of the first exit time (FET) of the processes from a strip; this mimics the times of the Steps of the myosin head during the sliding movement outside a potential well due to the interaction with actin. For the case of time-changed diffusion process, we specify an equation for the probability density function of the FET from a strip. The schemes of two simulation algorithms are provided and performed. Some numerical and simulation results are given and discussed.
期刊介绍:
Mathematical Biosciences and Engineering (MBE) is an interdisciplinary Open Access journal promoting cutting-edge research, technology transfer and knowledge translation about complex data and information processing.
MBE publishes Research articles (long and original research); Communications (short and novel research); Expository papers; Technology Transfer and Knowledge Translation reports (description of new technologies and products); Announcements and Industrial Progress and News (announcements and even advertisement, including major conferences).