基于RNA n6 -甲基腺苷调节因子的新型葡萄膜炎诊断和亚型分类模型

IF 2.6 4区 医学 Q2 OPHTHALMOLOGY
Xin Gu, Yan Qin, Guoqiang Liang
{"title":"基于RNA n6 -甲基腺苷调节因子的新型葡萄膜炎诊断和亚型分类模型","authors":"Xin Gu, Yan Qin, Guoqiang Liang","doi":"10.1080/09273948.2025.2495073","DOIUrl":null,"url":null,"abstract":"<p><strong>Purpose: </strong>To investigate the role of RNA N6-methyladenosine (m<sup>6</sup>A) regulators in the diagnosis and subtype classification of Behçet's uveitis, aiming to establish a novel predictive model and explore distinct molecular patterns for personalized therapeutic approaches.</p><p><strong>Methods: </strong>Data from the Gene Expression Omnibus GSE209567 dataset comprising 22 Behçet's uveitis patients and 15 controls were analyzed for m<sup>6</sup>A regulator expression. Differentially expressed genes were identified using the \"limma\" R package, followed by random forest (RF) and support vector machine (SVM) model construction to select critical m6A regulators. A nomogram model was developed for prediction, and consensus clustering identified distinct m<sup>6</sup>A and gene-regulating patterns. Immune cell infiltration analysis was conducted using ssGSEA, and m<sup>6</sup>A scores were computed to quantify molecular patterns.</p><p><strong>Results: </strong>Eleven m<sup>6</sup>A regulators were significantly differentially expressed. The top four candidate m<sup>6</sup>A regulators (FTO, YTHDF2, CBLL1, and METTL14) were identified to predict the risk of Behçet's uveitis. A nomogram was constructed based on the four candidate m<sup>6</sup>A regulators to visualize the association between the expression levels of the candidate with the risk of onset of Behçet's uveitis. Two distinct m<sup>6</sup>A patterns and gene patterns were identified, validated by consensus clustering. High m<sup>6</sup>A scores were associated with more severe disease stages, with differential immune cell infiltration observed between subtypes. Immune-related genes, such as LRRN3 and DAAM2, were identified as key in differentiating m<sup>6</sup>A patterns.</p><p><strong>Conclusion: </strong>M<sup>6</sup>A modification plays an important role in the occurrence of uveitis. Distinct m<sup>6</sup>A patterns and gene clusters highlight their potential for early diagnosis and personalized treatment.</p>","PeriodicalId":19406,"journal":{"name":"Ocular Immunology and Inflammation","volume":" ","pages":"1-10"},"PeriodicalIF":2.6000,"publicationDate":"2025-05-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A Novel Diagnostic and Subtype Classification Model Based on RNA N6-Methyladenosine Regulators for Behçet's Uveitis.\",\"authors\":\"Xin Gu, Yan Qin, Guoqiang Liang\",\"doi\":\"10.1080/09273948.2025.2495073\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Purpose: </strong>To investigate the role of RNA N6-methyladenosine (m<sup>6</sup>A) regulators in the diagnosis and subtype classification of Behçet's uveitis, aiming to establish a novel predictive model and explore distinct molecular patterns for personalized therapeutic approaches.</p><p><strong>Methods: </strong>Data from the Gene Expression Omnibus GSE209567 dataset comprising 22 Behçet's uveitis patients and 15 controls were analyzed for m<sup>6</sup>A regulator expression. Differentially expressed genes were identified using the \\\"limma\\\" R package, followed by random forest (RF) and support vector machine (SVM) model construction to select critical m6A regulators. A nomogram model was developed for prediction, and consensus clustering identified distinct m<sup>6</sup>A and gene-regulating patterns. Immune cell infiltration analysis was conducted using ssGSEA, and m<sup>6</sup>A scores were computed to quantify molecular patterns.</p><p><strong>Results: </strong>Eleven m<sup>6</sup>A regulators were significantly differentially expressed. The top four candidate m<sup>6</sup>A regulators (FTO, YTHDF2, CBLL1, and METTL14) were identified to predict the risk of Behçet's uveitis. A nomogram was constructed based on the four candidate m<sup>6</sup>A regulators to visualize the association between the expression levels of the candidate with the risk of onset of Behçet's uveitis. Two distinct m<sup>6</sup>A patterns and gene patterns were identified, validated by consensus clustering. High m<sup>6</sup>A scores were associated with more severe disease stages, with differential immune cell infiltration observed between subtypes. Immune-related genes, such as LRRN3 and DAAM2, were identified as key in differentiating m<sup>6</sup>A patterns.</p><p><strong>Conclusion: </strong>M<sup>6</sup>A modification plays an important role in the occurrence of uveitis. Distinct m<sup>6</sup>A patterns and gene clusters highlight their potential for early diagnosis and personalized treatment.</p>\",\"PeriodicalId\":19406,\"journal\":{\"name\":\"Ocular Immunology and Inflammation\",\"volume\":\" \",\"pages\":\"1-10\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2025-05-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Ocular Immunology and Inflammation\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1080/09273948.2025.2495073\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"OPHTHALMOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Ocular Immunology and Inflammation","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1080/09273948.2025.2495073","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"OPHTHALMOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

目的:探讨RNA n6 -甲基腺苷(RNA n6 - methylladenosine, m6A)调节因子在behaperet葡萄膜炎诊断和亚型分类中的作用,旨在建立新的预测模型,探索不同的分子模式,为个性化治疗提供依据。方法:来自基因表达Omnibus GSE209567数据集的数据包括22名behet葡萄膜炎患者和15名对照者,分析m6A调节因子的表达。利用“limma”R包识别差异表达基因,然后通过随机森林(RF)和支持向量机(SVM)模型构建选择关键的m6A调控因子。开发了一个nomogram模型用于预测,共识聚类识别出不同的m6A和基因调控模式。使用ssGSEA进行免疫细胞浸润分析,并计算m6A评分来量化分子模式。结果:11个m6A调节因子的表达有显著差异。确定了四个候选m6A调节因子(FTO, YTHDF2, CBLL1和METTL14)来预测behet葡萄膜炎的风险。基于四种候选m6A调节因子构建nomogram,可视化候选m6A调节因子表达水平与behaperet葡萄膜炎发病风险之间的关系。鉴定出两种不同的m6A模式和基因模式,并通过共识聚类验证。高m6A评分与更严重的疾病阶段相关,不同亚型之间观察到不同的免疫细胞浸润。免疫相关基因,如LRRN3和DAAM2,被认为是分化m6A模式的关键。结论:M6A基因修饰在葡萄膜炎的发生中起重要作用。不同的m6A模式和基因簇突出了其早期诊断和个性化治疗的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Novel Diagnostic and Subtype Classification Model Based on RNA N6-Methyladenosine Regulators for Behçet's Uveitis.

Purpose: To investigate the role of RNA N6-methyladenosine (m6A) regulators in the diagnosis and subtype classification of Behçet's uveitis, aiming to establish a novel predictive model and explore distinct molecular patterns for personalized therapeutic approaches.

Methods: Data from the Gene Expression Omnibus GSE209567 dataset comprising 22 Behçet's uveitis patients and 15 controls were analyzed for m6A regulator expression. Differentially expressed genes were identified using the "limma" R package, followed by random forest (RF) and support vector machine (SVM) model construction to select critical m6A regulators. A nomogram model was developed for prediction, and consensus clustering identified distinct m6A and gene-regulating patterns. Immune cell infiltration analysis was conducted using ssGSEA, and m6A scores were computed to quantify molecular patterns.

Results: Eleven m6A regulators were significantly differentially expressed. The top four candidate m6A regulators (FTO, YTHDF2, CBLL1, and METTL14) were identified to predict the risk of Behçet's uveitis. A nomogram was constructed based on the four candidate m6A regulators to visualize the association between the expression levels of the candidate with the risk of onset of Behçet's uveitis. Two distinct m6A patterns and gene patterns were identified, validated by consensus clustering. High m6A scores were associated with more severe disease stages, with differential immune cell infiltration observed between subtypes. Immune-related genes, such as LRRN3 and DAAM2, were identified as key in differentiating m6A patterns.

Conclusion: M6A modification plays an important role in the occurrence of uveitis. Distinct m6A patterns and gene clusters highlight their potential for early diagnosis and personalized treatment.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
6.20
自引率
15.20%
发文量
285
审稿时长
6-12 weeks
期刊介绍: Ocular Immunology & Inflammation ranks 18 out of 59 in the Ophthalmology Category.Ocular Immunology and Inflammation is a peer-reviewed, scientific publication that welcomes the submission of original, previously unpublished manuscripts directed to ophthalmologists and vision scientists. Published bimonthly, the journal provides an international medium for basic and clinical research reports on the ocular inflammatory response and its control by the immune system. The journal publishes original research papers, case reports, reviews, letters to the editor, meeting abstracts, and invited editorials.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信