建立基于nomogram预后模型(LASSO-Cox回归)预测不同储存条件下血小板储存病变。

IF 3.9 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Frontiers in Molecular Biosciences Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI:10.3389/fmolb.2025.1561114
Jun Xiao, Huimin Li, Xiaowei Li, Huifen Lei, Zhicai Li, Cuiying Li
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引用次数: 0

摘要

血小板浓缩物(PCs)是用于输血的关键血液制品,但储存的血小板经常出现质量恶化,导致输血后疗效降低。目前,缺乏有效的预测模型阻碍了血小板储存质量的评估。为了解决这个问题,我们开发了一种基于mirna的预后预测模型,该模型综合评估了不同储存条件下血小板的质量,为血小板的保质期提供了有价值的见解。方法:选取249个符合条件的PC样本,分为训练数据集和内部验证数据集(7:3)。通过microRNA测序,我们鉴定出13种与血小板储存病变(psl)相关的差异表达mirna。利用LASSO-Cox回归模型,我们基于miRNA表达与无psls生存时间之间的关系构建了一个基于nomogram分类器。使用一致性指数、曲线下面积、校准曲线和决策曲线分析等指标进行绩效评价,以确认模型的稳健性。结果:结合mirna (miR-4485-3p、miR-12136、miR-25-5p、miR-148b-5p)和存储方法的nomogram分类器有效地将pc划分为高风险和低风险组。值得注意的是,在所有数据集中观察到无psls生存率的显着差异,强调了我们基于nomogram模型的精确性和准确性。讨论:这一创新的分类器为临床医生提供了可靠的工具来预测不同存储方式的pc中psl的发生,促进了临床决策的改进。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Establishment of a nomogram-based prognostic model (LASSO-Cox regression) for predicting platelet storage lesions under different storage conditions.

Introduction: Platelet concentrates (PCs) are critical blood products used for transfusion, but stored platelets often experience quality deterioration, resulting in reduced efficacy post-transfusion. Currently, the lack of effective prediction models hinders the assessment of platelet storage quality. To address this, we developed a miRNA-based prognosis prediction model that comprehensively evaluates platelet quality under diverse storage conditions, offering valuable insights into platelet shelf life.

Methods: We enrolled 249 eligible PC samples, divided into a training dataset and internal validation dataset (7:3). Through microRNA sequencing, we identified 13 differentially expressed miRNAs with platelets storage lesions (PSLs). Leveraging the LASSO-Cox regression model, we constructed a nomogram-based classifier based on the association between miRNA expression and the duration of PSLs-free survival. Performance evaluation using measures like concordance index, area under the curve, calibration curves, and decision curve analyses to confirm the model's robustness.

Results: The nomogram classifier, incorporating miRNAs (miR-4485-3p, miR-12136, miR-25-5p, miR-148b-5p) and storage method, effectively categorized PCs into high-risk and low-risk groups. Notably, significant differences in PSLs-free survival were observed across all datasets, underscoring the precision and accuracy of our nomogram-based model.

Discussion: This innovative classifier provides clinicians with a reliable tool to predict PSLs occurrence in PCs stored under different methods, facilitating improved clinical decision-making.

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来源期刊
Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
7.20
自引率
4.00%
发文量
1361
审稿时长
14 weeks
期刊介绍: Much of contemporary investigation in the life sciences is devoted to the molecular-scale understanding of the relationships between genes and the environment — in particular, dynamic alterations in the levels, modifications, and interactions of cellular effectors, including proteins. Frontiers in Molecular Biosciences offers an international publication platform for basic as well as applied research; we encourage contributions spanning both established and emerging areas of biology. To this end, the journal draws from empirical disciplines such as structural biology, enzymology, biochemistry, and biophysics, capitalizing as well on the technological advancements that have enabled metabolomics and proteomics measurements in massively parallel throughput, and the development of robust and innovative computational biology strategies. We also recognize influences from medicine and technology, welcoming studies in molecular genetics, molecular diagnostics and therapeutics, and nanotechnology. Our ultimate objective is the comprehensive illustration of the molecular mechanisms regulating proteins, nucleic acids, carbohydrates, lipids, and small metabolites in organisms across all branches of life. In addition to interesting new findings, techniques, and applications, Frontiers in Molecular Biosciences will consider new testable hypotheses to inspire different perspectives and stimulate scientific dialogue. The integration of in silico, in vitro, and in vivo approaches will benefit endeavors across all domains of the life sciences.
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