为什么组蛋白单甲基化和二甲基化会导致与LEDGF结合的显著差异?

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Hinako X Suzuki, Hisashi Okumura, Satoru G Itoh
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引用次数: 0

摘要

晶状体上皮衍生生长因子(LEDGF)是一种染色质结合蛋白。它调节基因转录,并与获得性免疫缺陷综合征和癌症有关。其PWWP结构域在K36位点与组蛋白H3结合(H3K36)。结合亲和力取决于H3K36甲基化。为了研究这种依赖性,我们对PWWP结构域和组蛋白片段进行了分子动力学模拟。我们发现除了疏水相互作用外,静电相互作用也很重要。非甲基化和单甲基化的H3K36不能维持这种结合,因为这些H3K36的尖端与水分子形成氢键,而二甲基化和三甲基化的H3K36没有形成这样的氢键,使得这种结合稳定。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Why do histone monomethylation and dimethylation cause a significant difference in binding to LEDGF?

Lens epithelium-derived growth factor (LEDGF) is a chromatin-binding protein. It regulates gene transcription and is associated with acquired immunodeficiency syndrome and cancer. Its PWWP domain binds to histone H3 at K36 (H3K36). The binding affinity depends on H3K36 methylation. To investigate this dependency, we performed molecular dynamics simulations of the PWWP domain and histone fragments. We found that not only hydrophobic interaction but also electrostatic interaction is important. The binding is not maintained with nonmethylated and monomethylated H3K36 because the tips of these H3K36s form hydrogen bonds with water molecules, while dimethylated and trimethylated H3K36 form no such hydrogen bond, making this binding stable.

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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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