Debmalya Roy, Aniruddha Guha, James Yates, Suman Chakraborty
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Alternative efforts towards mitigating these bottlenecks through deploying hydrocarbon-mediated EB shrinkage face challenges due to uncontrolled carbon contamination or a lack thereof in cleaner transmission electron microscope (TEM) chambers. To address these challenges, here we report an alternative approach of high-precision hydrocarbon-mediated EB shrinking with hydrocarbons sourced externally through controlled surface reactions on exposure to ethanol. This provides several decisive advantages, including the reduction of pore diameters much larger than the membrane thickness and controlled shrinking in cleaner environments without contaminations. These measures accelerate nanopore fabrication, improve its predictability by eliminating the dependence on variable carbon contamination in vacuum chambers, and provide high-resolution live feedback during dimension tuning. As a result, our method supports the large-scale production of nanopores with analyte-specific, tuneable dimensions. This capability is particularly imperative for low-noise biomolecular sequencing applications that leverage electrically-modulated transport and sensing over nanoscales. These features could pave the way for the broader application of SSNPs, addressing long-standing challenges in their fabrication and functionalisation that remained unresolved thus far.</p>","PeriodicalId":11596,"journal":{"name":"ELECTROPHORESIS","volume":" ","pages":""},"PeriodicalIF":3.0000,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Precise Shrinkage of Silicon Nitride Nanopores Via Externally Sourced Hydrocarbons.\",\"authors\":\"Debmalya Roy, Aniruddha Guha, James Yates, Suman Chakraborty\",\"doi\":\"10.1002/elps.8150\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Solid-state nanopores (SSNPs) are progressively gaining importance in biomolecular sensing and ionic circuit applications. Unlocking their full potential, however, requires the development of fabrication techniques that enable precise control over their sizes and shapes. Electron-beam (EB) shrinking provides precise, real-time feedback and is ideally suited to address these requirements. However, it necessitates an initial pore diameter smaller than the membrane thickness for effective shrinking without material addition. Typical focused ion beam (FIB)-drilled pores in silicon nitride membranes often fail to meet these requirements. Alternative efforts towards mitigating these bottlenecks through deploying hydrocarbon-mediated EB shrinkage face challenges due to uncontrolled carbon contamination or a lack thereof in cleaner transmission electron microscope (TEM) chambers. To address these challenges, here we report an alternative approach of high-precision hydrocarbon-mediated EB shrinking with hydrocarbons sourced externally through controlled surface reactions on exposure to ethanol. This provides several decisive advantages, including the reduction of pore diameters much larger than the membrane thickness and controlled shrinking in cleaner environments without contaminations. These measures accelerate nanopore fabrication, improve its predictability by eliminating the dependence on variable carbon contamination in vacuum chambers, and provide high-resolution live feedback during dimension tuning. As a result, our method supports the large-scale production of nanopores with analyte-specific, tuneable dimensions. This capability is particularly imperative for low-noise biomolecular sequencing applications that leverage electrically-modulated transport and sensing over nanoscales. These features could pave the way for the broader application of SSNPs, addressing long-standing challenges in their fabrication and functionalisation that remained unresolved thus far.</p>\",\"PeriodicalId\":11596,\"journal\":{\"name\":\"ELECTROPHORESIS\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-05-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ELECTROPHORESIS\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1002/elps.8150\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ELECTROPHORESIS","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/elps.8150","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Precise Shrinkage of Silicon Nitride Nanopores Via Externally Sourced Hydrocarbons.
Solid-state nanopores (SSNPs) are progressively gaining importance in biomolecular sensing and ionic circuit applications. Unlocking their full potential, however, requires the development of fabrication techniques that enable precise control over their sizes and shapes. Electron-beam (EB) shrinking provides precise, real-time feedback and is ideally suited to address these requirements. However, it necessitates an initial pore diameter smaller than the membrane thickness for effective shrinking without material addition. Typical focused ion beam (FIB)-drilled pores in silicon nitride membranes often fail to meet these requirements. Alternative efforts towards mitigating these bottlenecks through deploying hydrocarbon-mediated EB shrinkage face challenges due to uncontrolled carbon contamination or a lack thereof in cleaner transmission electron microscope (TEM) chambers. To address these challenges, here we report an alternative approach of high-precision hydrocarbon-mediated EB shrinking with hydrocarbons sourced externally through controlled surface reactions on exposure to ethanol. This provides several decisive advantages, including the reduction of pore diameters much larger than the membrane thickness and controlled shrinking in cleaner environments without contaminations. These measures accelerate nanopore fabrication, improve its predictability by eliminating the dependence on variable carbon contamination in vacuum chambers, and provide high-resolution live feedback during dimension tuning. As a result, our method supports the large-scale production of nanopores with analyte-specific, tuneable dimensions. This capability is particularly imperative for low-noise biomolecular sequencing applications that leverage electrically-modulated transport and sensing over nanoscales. These features could pave the way for the broader application of SSNPs, addressing long-standing challenges in their fabrication and functionalisation that remained unresolved thus far.
期刊介绍:
ELECTROPHORESIS is an international journal that publishes original manuscripts on all aspects of electrophoresis, and liquid phase separations (e.g., HPLC, micro- and nano-LC, UHPLC, micro- and nano-fluidics, liquid-phase micro-extractions, etc.).
Topics include new or improved analytical and preparative methods, sample preparation, development of theory, and innovative applications of electrophoretic and liquid phase separations methods in the study of nucleic acids, proteins, carbohydrates natural products, pharmaceuticals, food analysis, environmental species and other compounds of importance to the life sciences.
Papers in the areas of microfluidics and proteomics, which are not limited to electrophoresis-based methods, will also be accepted for publication. Contributions focused on hyphenated and omics techniques are also of interest. Proteomics is within the scope, if related to its fundamentals and new technical approaches. Proteomics applications are only considered in particular cases.
Papers describing the application of standard electrophoretic methods will not be considered.
Papers on nanoanalysis intended for publication in ELECTROPHORESIS should focus on one or more of the following topics:
• Nanoscale electrokinetics and phenomena related to electric double layer and/or confinement in nano-sized geometry
• Single cell and subcellular analysis
• Nanosensors and ultrasensitive detection aspects (e.g., involving quantum dots, "nanoelectrodes" or nanospray MS)
• Nanoscale/nanopore DNA sequencing (next generation sequencing)
• Micro- and nanoscale sample preparation
• Nanoparticles and cells analyses by dielectrophoresis
• Separation-based analysis using nanoparticles, nanotubes and nanowires.