多带角鳗线粒体全基因组的特征及其在胎生科的系统发育地位。

IF 2.7 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE
Animals Pub Date : 2025-04-30 DOI:10.3390/ani15091284
Shengjie Zhang, Kangqi Zhou, Xianhui Pan, Yong Lin, Jinxia Peng, Junqi Qin, Zhenlin Ke, Yaoquan Han, Zhong Chen, Xuesong Du, Wenhong Li, Pinyuan Wei, Dapeng Wang
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引用次数: 0

摘要

在中国,多带Angulyagra polyzonata是一种经济上重要的软体动物,但对其线粒体基因组的详细了解仍然很少。在这项研究中,我们测序并全面分析了A. polyzonata线粒体基因组的结构特征和选择压力。利用最大似然法和贝叶斯系统发育推断法,构建了多带甲藻与腹足类、双壳类等21种甲藻的系统发育树。全长17379 bp的线粒体基因组包含22个转移RNA基因、2个核糖体RNA基因和13个蛋白质编码基因,与其他腹足动物线粒体基因的组成和排列相似。值得注意的是,多带螺线粒体蛋白编码基因(nad5、cox3、nad3、nad2、cox1、cox2、atp8、atp6、nad1、nad6、cob、nad41和nad4)的Ka/Ks比值分别为trnW和trnQ,多带螺的基因组成与其他圆锥螺家族成员具有高度的同源性。系统发育分析表明,所选物种可划分为两个初级支系,其中多带甲隶属于胎鸟科。本研究填补了关于多带棘蛛线粒体基因组的知识空白,并对胎生科内的系统关系提供了有价值的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Characterization of the Complete Mitochondrial Genome of Angulyagra polyzonata and Its Phylogenetic Status in Viviparidae.

Angulyagra polyzonata is an economically important mollusk in China, but detailed insights into its mitochondrial genome remain scarce. In this study, we sequenced and comprehensively analyzed the structural features and selection pressures of the A. polyzonata mitochondrial genome. The maximum likelihood method and Bayesian phylogenetic inference method were used to construct a phylogenetic tree of A. polyzonata with 21 other species, including gastropods and bivalves. The full-length mitochondrial genome of 17,379 bp was found to include 22 transfer RNA genes, 2 ribosomal RNA genes, and 13 protein-coding genes, exhibiting similarity to the composition and arrangement of mitochondrial genes in other gastropod species. Notably, the Ka/Ks ratios of mitochondrial protein-coding genes (nad5, cox3, nad3, nad2, cox1, cox2, atp8, atp6, nadl, nad6, cob, nad4l, and nad4) were <1, which indicates that the snail genes of the three genera of the family may have been subjected to strong natural selection pressure during the evolutionary process, so that the number of synonymous mutations (ks) in genes was much more than that of nonsynonymous mutations (ka). Comparative genomic analysis indicated that, apart from the absence of trnW and trnQ, the gene composition of A. polyzonata shares a high degree of homology with other members of the conical snail family. Phylogenetic analysis demonstrated that the selected species could be classified into two primary clades in which A. polyzonata clustered with the Viviparidae family. This study bridges the knowledge gap regarding the mitochondrial genome of A. polyzonata and offers valuable insights into the systematic relationships within the Viviparidae family.

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来源期刊
Animals
Animals Agricultural and Biological Sciences-Animal Science and Zoology
CiteScore
4.90
自引率
16.70%
发文量
3015
审稿时长
20.52 days
期刊介绍: Animals (ISSN 2076-2615) is an international and interdisciplinary scholarly open access journal. It publishes original research articles, reviews, communications, and short notes that are relevant to any field of study that involves animals, including zoology, ethnozoology, animal science, animal ethics and animal welfare. However, preference will be given to those articles that provide an understanding of animals within a larger context (i.e., the animals'' interactions with the outside world, including humans). There is no restriction on the length of the papers. Our aim is to encourage scientists to publish their experimental and theoretical research in as much detail as possible. Full experimental details and/or method of study, must be provided for research articles. Articles submitted that involve subjecting animals to unnecessary pain or suffering will not be accepted, and all articles must be submitted with the necessary ethical approval (please refer to the Ethical Guidelines for more information).
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