{"title":"多带角鳗线粒体全基因组的特征及其在胎生科的系统发育地位。","authors":"Shengjie Zhang, Kangqi Zhou, Xianhui Pan, Yong Lin, Jinxia Peng, Junqi Qin, Zhenlin Ke, Yaoquan Han, Zhong Chen, Xuesong Du, Wenhong Li, Pinyuan Wei, Dapeng Wang","doi":"10.3390/ani15091284","DOIUrl":null,"url":null,"abstract":"<p><p><i>Angulyagra polyzonata</i> is an economically important mollusk in China, but detailed insights into its mitochondrial genome remain scarce. In this study, we sequenced and comprehensively analyzed the structural features and selection pressures of the <i>A. polyzonata</i> mitochondrial genome. The maximum likelihood method and Bayesian phylogenetic inference method were used to construct a phylogenetic tree of <i>A. polyzonata</i> with 21 other species, including gastropods and bivalves. The full-length mitochondrial genome of 17,379 bp was found to include 22 transfer RNA genes, 2 ribosomal RNA genes, and 13 protein-coding genes, exhibiting similarity to the composition and arrangement of mitochondrial genes in other gastropod species. Notably, the Ka/Ks ratios of mitochondrial protein-coding genes (<i>nad5</i>, <i>cox3</i>, <i>nad3</i>, <i>nad2</i>, <i>cox1</i>, <i>cox2</i>, <i>atp8</i>, <i>atp6</i>, <i>nadl</i>, <i>nad6</i>, <i>cob</i>, <i>nad4l</i>, and <i>nad4</i>) were <1, which indicates that the snail genes of the three genera of the family may have been subjected to strong natural selection pressure during the evolutionary process, so that the number of synonymous mutations (ks) in genes was much more than that of nonsynonymous mutations (ka). Comparative genomic analysis indicated that, apart from the absence of <i>trnW</i> and <i>trnQ</i>, the gene composition of <i>A. polyzonata</i> shares a high degree of homology with other members of the conical snail family. Phylogenetic analysis demonstrated that the selected species could be classified into two primary clades in which <i>A. polyzonata</i> clustered with the Viviparidae family. This study bridges the knowledge gap regarding the mitochondrial genome of <i>A. polyzonata</i> and offers valuable insights into the systematic relationships within the Viviparidae family.</p>","PeriodicalId":7955,"journal":{"name":"Animals","volume":"15 9","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2025-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12070950/pdf/","citationCount":"0","resultStr":"{\"title\":\"Characterization of the Complete Mitochondrial Genome of <i>Angulyagra polyzonata</i> and Its Phylogenetic Status in Viviparidae.\",\"authors\":\"Shengjie Zhang, Kangqi Zhou, Xianhui Pan, Yong Lin, Jinxia Peng, Junqi Qin, Zhenlin Ke, Yaoquan Han, Zhong Chen, Xuesong Du, Wenhong Li, Pinyuan Wei, Dapeng Wang\",\"doi\":\"10.3390/ani15091284\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Angulyagra polyzonata</i> is an economically important mollusk in China, but detailed insights into its mitochondrial genome remain scarce. In this study, we sequenced and comprehensively analyzed the structural features and selection pressures of the <i>A. polyzonata</i> mitochondrial genome. The maximum likelihood method and Bayesian phylogenetic inference method were used to construct a phylogenetic tree of <i>A. polyzonata</i> with 21 other species, including gastropods and bivalves. The full-length mitochondrial genome of 17,379 bp was found to include 22 transfer RNA genes, 2 ribosomal RNA genes, and 13 protein-coding genes, exhibiting similarity to the composition and arrangement of mitochondrial genes in other gastropod species. Notably, the Ka/Ks ratios of mitochondrial protein-coding genes (<i>nad5</i>, <i>cox3</i>, <i>nad3</i>, <i>nad2</i>, <i>cox1</i>, <i>cox2</i>, <i>atp8</i>, <i>atp6</i>, <i>nadl</i>, <i>nad6</i>, <i>cob</i>, <i>nad4l</i>, and <i>nad4</i>) were <1, which indicates that the snail genes of the three genera of the family may have been subjected to strong natural selection pressure during the evolutionary process, so that the number of synonymous mutations (ks) in genes was much more than that of nonsynonymous mutations (ka). Comparative genomic analysis indicated that, apart from the absence of <i>trnW</i> and <i>trnQ</i>, the gene composition of <i>A. polyzonata</i> shares a high degree of homology with other members of the conical snail family. Phylogenetic analysis demonstrated that the selected species could be classified into two primary clades in which <i>A. polyzonata</i> clustered with the Viviparidae family. This study bridges the knowledge gap regarding the mitochondrial genome of <i>A. polyzonata</i> and offers valuable insights into the systematic relationships within the Viviparidae family.</p>\",\"PeriodicalId\":7955,\"journal\":{\"name\":\"Animals\",\"volume\":\"15 9\",\"pages\":\"\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2025-04-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12070950/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Animals\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.3390/ani15091284\",\"RegionNum\":2,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"AGRICULTURE, DAIRY & ANIMAL SCIENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Animals","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.3390/ani15091284","RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"AGRICULTURE, DAIRY & ANIMAL SCIENCE","Score":null,"Total":0}
Characterization of the Complete Mitochondrial Genome of Angulyagra polyzonata and Its Phylogenetic Status in Viviparidae.
Angulyagra polyzonata is an economically important mollusk in China, but detailed insights into its mitochondrial genome remain scarce. In this study, we sequenced and comprehensively analyzed the structural features and selection pressures of the A. polyzonata mitochondrial genome. The maximum likelihood method and Bayesian phylogenetic inference method were used to construct a phylogenetic tree of A. polyzonata with 21 other species, including gastropods and bivalves. The full-length mitochondrial genome of 17,379 bp was found to include 22 transfer RNA genes, 2 ribosomal RNA genes, and 13 protein-coding genes, exhibiting similarity to the composition and arrangement of mitochondrial genes in other gastropod species. Notably, the Ka/Ks ratios of mitochondrial protein-coding genes (nad5, cox3, nad3, nad2, cox1, cox2, atp8, atp6, nadl, nad6, cob, nad4l, and nad4) were <1, which indicates that the snail genes of the three genera of the family may have been subjected to strong natural selection pressure during the evolutionary process, so that the number of synonymous mutations (ks) in genes was much more than that of nonsynonymous mutations (ka). Comparative genomic analysis indicated that, apart from the absence of trnW and trnQ, the gene composition of A. polyzonata shares a high degree of homology with other members of the conical snail family. Phylogenetic analysis demonstrated that the selected species could be classified into two primary clades in which A. polyzonata clustered with the Viviparidae family. This study bridges the knowledge gap regarding the mitochondrial genome of A. polyzonata and offers valuable insights into the systematic relationships within the Viviparidae family.
AnimalsAgricultural and Biological Sciences-Animal Science and Zoology
CiteScore
4.90
自引率
16.70%
发文量
3015
审稿时长
20.52 days
期刊介绍:
Animals (ISSN 2076-2615) is an international and interdisciplinary scholarly open access journal. It publishes original research articles, reviews, communications, and short notes that are relevant to any field of study that involves animals, including zoology, ethnozoology, animal science, animal ethics and animal welfare. However, preference will be given to those articles that provide an understanding of animals within a larger context (i.e., the animals'' interactions with the outside world, including humans). There is no restriction on the length of the papers. Our aim is to encourage scientists to publish their experimental and theoretical research in as much detail as possible. Full experimental details and/or method of study, must be provided for research articles. Articles submitted that involve subjecting animals to unnecessary pain or suffering will not be accepted, and all articles must be submitted with the necessary ethical approval (please refer to the Ethical Guidelines for more information).