黑色素的结构及其构效关系的研究。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Accounts of Chemical Research Pub Date : 2025-05-06 Epub Date: 2025-04-15 DOI:10.1021/acs.accounts.5c00120
Arpan Choudhury, Debashree Ghosh
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引用次数: 0

摘要

黑色素,特别是真黑色素,是自然界中丰富的棕黑色色素。它是一种非均相生物聚合物,以其在人类、动物和植物中惊人的光保护特性而闻名。最近发现了真黑素的许多其他特性,包括自由基清除、热调节、电荷传输等。虽然黑色素的存在和重要性早已被人们所接受,但其确切的化学组成仍不清楚。黑色素具有固有的结构多样性和复杂性,这使得理解它的许多特性具有挑战性。因此,我们对黑色素的结构-性质关系的认识还有很大的差距。另一方面,由于其多样的特性和生物相容性,人们对利用类黑色素支架设计具有目标特性的仿生装置和材料非常感兴趣。此外,最近对其性质的分子起源的理解也是基于合成黑色素类似物。由于所有这些原因,了解黑色素的结构及其结构-性质关系对这一方向的许多进展仍然至关重要。我们的研究围绕提供新的见解黑色素的结构及其结构-功能相关性的性质,如吸收光谱,电子传输和光保护。我们使用了基于计算化学和机器学习相结合的工具来回答这些问题。该小组为解决这个问题而开发的许多方法和协议可以用于类似复杂性的其他问题。阐明黑色素化学的这些方面的困难在于其固有的结构和化学多样性。它是一种生物聚合物,在单体单位、氧化态、聚合位点和显著的构象自由度方面具有异质性。黑色素的许多吸引人的特性都是这种多样性的直接结果。其中一个特性是它的宽带吸收光谱,这使得它可以吸收紫外线-可见光范围内的光,因此,它可以作为一种抗太阳辐射的光保护剂。黑色素吸收光谱的单调和无特征的形式是不寻常的。现在人们普遍认为,这些不寻常的光谱是由结构和化学的非均质性造成的。因此,分离负责光谱不同部分的特定发色团的问题成为一项艰巨的任务。虽然以前的计算和实验研究表明,多样性是这一特性的核心,即光谱是一个集合或平均光谱,但他们还不能确定具体的结构。因此,我们使用机器学习和人工智能概念来识别模式并重建特定的结构。我们已经证明,在机器学习和计算化学的帮助下,数据驱动的方法可以识别重要发色团的特定结构或结构类别。这为解答黑色素吸收光谱的结构-功能相关性问题提供了重要的方向。对于电荷输运性质,我们已经证明了氢键网络的重要性,因此,氢键网络是有效电荷输运的最成功的结构基序。此外,通过自下而上的方法,我们还确定了光活化黑色素失活的非辐射途径。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Elucidating the Structure of Melanin and Its Structure-Property Correlation.

ConspectusMelanin, specifically eumelanin, is a brownish-black pigment abundant in nature. It is a heterogeneous biopolymer known most commonly for its spectacular photoprotection property in humans, animals, and plants. Numerous other properties of eumelanin have recently been identified, including radical scavenging, thermal regulation, charge transport, etc. While the presence and significance of melanin have long been accepted, its exact chemical makeup remains unclear. Melanin has an inherent diversity of structure and complexity, making understanding many of its properties challenging. Therefore, there are large gaps in our understanding of the structure-property relationship in melanin. On the other hand, due to its diverse properties and biocompatibility, there is significant interest in engineering such biomimetic devices and materials with targeted properties utilizing melanin-like scaffolds. Furthermore, recent efforts toward understanding the molecular origin of its properties are also based on synthetic melanin analogs. For all these reasons, understanding the structure of melanin and its structure-property relationship remains pivotal to much of the progress in this direction.Our research has revolved around providing new insights into the structure of melanin and its structure-function correlations for properties such as absorption spectra, electron transport, and photoprotection. We have used tools based on a combination of computational chemistry and machine learning to answer these questions. Many of these methods and protocols developed in the group for solving this problem can be utilized for other problems of similar complexity.The difficulties in elucidating these aspects of melanin chemistry lie in its inherent structural and chemical diversity. It is a biopolymer with heterogeneity in monomeric units, oxidation states, polymerization site, and significant conformational degrees of freedom. Many of the attractive properties of melanin are a direct consequence of this diversity. One such property is its broadband absorption spectra, which allow it to absorb light across the UV-visible range and, therefore, function as a photoprotective agent against solar radiation. The melanin absorption spectra are unusual in their monotonic and featureless form. It is now well-accepted that both structural and chemical heterogeneity are responsible for these unusual spectra. Therefore, the problem of isolating specific chromophores responsible for different parts of the spectra becomes a daunting task. While previous computational and experimental studies have shown that diversity is central to this property, i.e., the spectrum is an ensemble or average spectrum, they have not been able to identify specific structures that are responsible. Therefore, we have used machine learning and artificial intelligence concepts to identify patterns and reconstruct particular structures. We have shown, with the help of machine learning and computational chemistry, that data-driven approaches can identify specific structures or classes of structures that are important chromophores. This provides a significant direction in answering the questions about the structure-function correlation of melanin for its absorption spectra.For charge transport properties we have shown the importance of hydrogen bond networks and, therefore, the most successful structural motifs for efficient charge transport. Furthermore, with a bottom-up approach, we have also identified nonradiative pathways for the deactivation of photoactivated melanin.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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