Zehua Fan , Chenyu Li , Qiran Sun , Yiwen Luo , Hancheng Lin , Bin Cong , Ping Huang
{"title":"基于机器学习的ATR-FTIR和拉曼光谱综合分析大鼠血清抑制应激","authors":"Zehua Fan , Chenyu Li , Qiran Sun , Yiwen Luo , Hancheng Lin , Bin Cong , Ping Huang","doi":"10.1016/j.saa.2025.126379","DOIUrl":null,"url":null,"abstract":"<div><div>In forensic practice, accurately determining whether an individual has been subjected to prolonged restraint or assessing injuries resulting from restraint can be challenging. To address this, we explored a novel approach using attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy and Raman spectroscopy combined with machine learning to jointly identify restraint stress. We randomly assigned rats into three experimental groups: a restraint stress group (subjected to fasting and water deprivation), a control group (subjected to fasting and water deprivation without restraint), and a normal group. After collecting the serum spectra of the animals, a principal component analysis (PCA) model was established to explore the separation trends among the groups and to identify relevant characteristic peaks. Subsequently, a random forest (RF) model was established to compare the restraint stress group with the other two groups. The analysis identified key substances that indicated the presence of restraint stress: 1161 cm<sup>−1</sup>, 1167 cm<sup>−1</sup> (anti-symmetric C-O-C stretch) and 980 cm<sup>−1</sup>, 976 cm<sup>−1</sup>, 974 cm<sup>−1</sup> (−N+(CH3)3, antisymmetric stretch). And the RF model was used to compare the restraint stress groups at different time points, revealing substances that may help determine the duration of restraint stress: 1747 cm<sup>−1</sup> (ester carbonyl band), 1626 cm<sup>−1</sup> (β-pleated sheet), 1211 cm<sup>−1</sup> (Amide III, −N+(CH3)3, antisymmetric stretch), 1180 cm<sup>−1</sup> (phosphodiester), 1128 cm<sup>−1</sup> (−C–C-), 1024 cm<sup>−1</sup> (C-O stretching coupled with C-O bending) and 1389 cm<sup>−1</sup>, 1335 cm<sup>−1</sup>, 1321 cm<sup>−1</sup> (Trp, α helix, phospholipids), 710 cm<sup>−1</sup> (Polysaccharides), 1266 cm<sup>−1</sup> (Amide Ⅲ), 1015 cm<sup>−1</sup> (β-carotene). These findings suggest that ATR-FTIR and Raman spectroscopy together, when combined with machine learning, has significant potential as a powerful tool for analyzing and characterizing restraint stress, offering new insights and directions for future research in this area.</div></div>","PeriodicalId":433,"journal":{"name":"Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy","volume":"340 ","pages":"Article 126379"},"PeriodicalIF":4.3000,"publicationDate":"2025-05-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Integrated analysis of restraint stress in rat serum using ATR-FTIR and Raman spectroscopy with Machine learning\",\"authors\":\"Zehua Fan , Chenyu Li , Qiran Sun , Yiwen Luo , Hancheng Lin , Bin Cong , Ping Huang\",\"doi\":\"10.1016/j.saa.2025.126379\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>In forensic practice, accurately determining whether an individual has been subjected to prolonged restraint or assessing injuries resulting from restraint can be challenging. To address this, we explored a novel approach using attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy and Raman spectroscopy combined with machine learning to jointly identify restraint stress. We randomly assigned rats into three experimental groups: a restraint stress group (subjected to fasting and water deprivation), a control group (subjected to fasting and water deprivation without restraint), and a normal group. After collecting the serum spectra of the animals, a principal component analysis (PCA) model was established to explore the separation trends among the groups and to identify relevant characteristic peaks. Subsequently, a random forest (RF) model was established to compare the restraint stress group with the other two groups. The analysis identified key substances that indicated the presence of restraint stress: 1161 cm<sup>−1</sup>, 1167 cm<sup>−1</sup> (anti-symmetric C-O-C stretch) and 980 cm<sup>−1</sup>, 976 cm<sup>−1</sup>, 974 cm<sup>−1</sup> (−N+(CH3)3, antisymmetric stretch). And the RF model was used to compare the restraint stress groups at different time points, revealing substances that may help determine the duration of restraint stress: 1747 cm<sup>−1</sup> (ester carbonyl band), 1626 cm<sup>−1</sup> (β-pleated sheet), 1211 cm<sup>−1</sup> (Amide III, −N+(CH3)3, antisymmetric stretch), 1180 cm<sup>−1</sup> (phosphodiester), 1128 cm<sup>−1</sup> (−C–C-), 1024 cm<sup>−1</sup> (C-O stretching coupled with C-O bending) and 1389 cm<sup>−1</sup>, 1335 cm<sup>−1</sup>, 1321 cm<sup>−1</sup> (Trp, α helix, phospholipids), 710 cm<sup>−1</sup> (Polysaccharides), 1266 cm<sup>−1</sup> (Amide Ⅲ), 1015 cm<sup>−1</sup> (β-carotene). These findings suggest that ATR-FTIR and Raman spectroscopy together, when combined with machine learning, has significant potential as a powerful tool for analyzing and characterizing restraint stress, offering new insights and directions for future research in this area.</div></div>\",\"PeriodicalId\":433,\"journal\":{\"name\":\"Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy\",\"volume\":\"340 \",\"pages\":\"Article 126379\"},\"PeriodicalIF\":4.3000,\"publicationDate\":\"2025-05-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1386142525006857\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"SPECTROSCOPY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1386142525006857","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"SPECTROSCOPY","Score":null,"Total":0}
Integrated analysis of restraint stress in rat serum using ATR-FTIR and Raman spectroscopy with Machine learning
In forensic practice, accurately determining whether an individual has been subjected to prolonged restraint or assessing injuries resulting from restraint can be challenging. To address this, we explored a novel approach using attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy and Raman spectroscopy combined with machine learning to jointly identify restraint stress. We randomly assigned rats into three experimental groups: a restraint stress group (subjected to fasting and water deprivation), a control group (subjected to fasting and water deprivation without restraint), and a normal group. After collecting the serum spectra of the animals, a principal component analysis (PCA) model was established to explore the separation trends among the groups and to identify relevant characteristic peaks. Subsequently, a random forest (RF) model was established to compare the restraint stress group with the other two groups. The analysis identified key substances that indicated the presence of restraint stress: 1161 cm−1, 1167 cm−1 (anti-symmetric C-O-C stretch) and 980 cm−1, 976 cm−1, 974 cm−1 (−N+(CH3)3, antisymmetric stretch). And the RF model was used to compare the restraint stress groups at different time points, revealing substances that may help determine the duration of restraint stress: 1747 cm−1 (ester carbonyl band), 1626 cm−1 (β-pleated sheet), 1211 cm−1 (Amide III, −N+(CH3)3, antisymmetric stretch), 1180 cm−1 (phosphodiester), 1128 cm−1 (−C–C-), 1024 cm−1 (C-O stretching coupled with C-O bending) and 1389 cm−1, 1335 cm−1, 1321 cm−1 (Trp, α helix, phospholipids), 710 cm−1 (Polysaccharides), 1266 cm−1 (Amide Ⅲ), 1015 cm−1 (β-carotene). These findings suggest that ATR-FTIR and Raman spectroscopy together, when combined with machine learning, has significant potential as a powerful tool for analyzing and characterizing restraint stress, offering new insights and directions for future research in this area.
期刊介绍:
Spectrochimica Acta, Part A: Molecular and Biomolecular Spectroscopy (SAA) is an interdisciplinary journal which spans from basic to applied aspects of optical spectroscopy in chemistry, medicine, biology, and materials science.
The journal publishes original scientific papers that feature high-quality spectroscopic data and analysis. From the broad range of optical spectroscopies, the emphasis is on electronic, vibrational or rotational spectra of molecules, rather than on spectroscopy based on magnetic moments.
Criteria for publication in SAA are novelty, uniqueness, and outstanding quality. Routine applications of spectroscopic techniques and computational methods are not appropriate.
Topics of particular interest of Spectrochimica Acta Part A include, but are not limited to:
Spectroscopy and dynamics of bioanalytical, biomedical, environmental, and atmospheric sciences,
Novel experimental techniques or instrumentation for molecular spectroscopy,
Novel theoretical and computational methods,
Novel applications in photochemistry and photobiology,
Novel interpretational approaches as well as advances in data analysis based on electronic or vibrational spectroscopy.