探索伤口愈合中单细胞转录组分析的机器学习策略

IF 6.3 1区 医学 Q1 DERMATOLOGY
Jianzhou Cui, Mei Wang, Chenshi Lin, Xu Xu, Zhenqing Zhang
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引用次数: 0

摘要

伤口愈合是一个高度协调的多阶段过程,涉及各种细胞类型和分子途径。单细胞转录组学和机器学习的最新进展为这一过程的复杂性提供了前所未有的见解,使鉴定新的细胞亚群和组织修复的分子机制成为可能。特别是,单细胞RNA测序(scRNA-seq)已经揭示了显著的细胞异质性,特别是在成纤维细胞群体中,并为愈合过程中的免疫细胞动力学提供了有价值的信息。机器学习算法通过改进细胞聚类、降维和轨迹推断来增强数据分析,从而在单细胞水平上更好地理解伤口愈合。本文综述了scRNA-seq和机器学习在伤口愈合研究中的最新研究成果,重点介绍了成纤维细胞多样性、免疫反应和细胞的空间组织。这些技术的整合有可能彻底改变慢性伤口、纤维化和组织再生的治疗策略,为精准医疗提供新的机会。通过将计算方法与生物学见解相结合,本综述强调了scRNA-seq和机器学习对伤口愈合研究的变革性影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring machine learning strategies for single-cell transcriptomic analysis in wound healing
Wound healing is a highly orchestrated, multi-phase process that involves various cell types and molecular pathways. Recent advances in single-cell transcriptomics and machine learning have provided unprecedented insights into the complexity of this process, enabling the identification of novel cellular subpopulations and molecular mechanisms underlyingtissue repair. In particular, single-cell RNA sequencing (scRNA-seq) has revealedsignificant cellular heterogeneity, especially withinfibroblast populations, and has provided valuable information on immune cell dynamics during healing. Machine learning algorithms have enhanced data analysis by improving cell clustering, dimensionality reduction, and trajectory inference, leading to a better understanding of wound healing at the single-cell level. This review synthesizes the latest findings on the application of scRNA-seq and machine learning in wound healing research, with a focus on fibroblast diversity, immune responses, and spatial organization of cells. The integration of these technologies has the potential to revolutionize therapeutic strategies for chronic wounds, fibrosis, and tissue regeneration, offering new opportunities for precision medicine. By combining computational approacheswith biological insights, this review highlights the transformative impact of scRNA-seq and machine learning on wound healing research.
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来源期刊
Burns & Trauma
Burns & Trauma 医学-皮肤病学
CiteScore
8.40
自引率
9.40%
发文量
186
审稿时长
6 weeks
期刊介绍: The first open access journal in the field of burns and trauma injury in the Asia-Pacific region, Burns & Trauma publishes the latest developments in basic, clinical and translational research in the field. With a special focus on prevention, clinical treatment and basic research, the journal welcomes submissions in various aspects of biomaterials, tissue engineering, stem cells, critical care, immunobiology, skin transplantation, and the prevention and regeneration of burns and trauma injuries. With an expert Editorial Board and a team of dedicated scientific editors, the journal enjoys a large readership and is supported by Southwest Hospital, which covers authors'' article processing charges.
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