Yiming Dai , Ye Cui , Qingchen Xiao , Meiling Ping , Yiming Zhang , Shiguang Hu , Hao Chen , Xiaoyu Li , Jin Chen
{"title":"环境干扰对马地黄根际细菌多样性、结构和共生网络的影响","authors":"Yiming Dai , Ye Cui , Qingchen Xiao , Meiling Ping , Yiming Zhang , Shiguang Hu , Hao Chen , Xiaoyu Li , Jin Chen","doi":"10.1016/j.pmpp.2025.102716","DOIUrl":null,"url":null,"abstract":"<div><div>Physicochemical properties of the soil and vegetation types exert primary influences on soil microorganisms, yet there is limited research on the impacts of two different levels of disturbance, especially in the rhizosphere of the <em>Digitaria sanguinalis</em>. To fill this knowledge gap, we employed the Illumina Miseq high-throughput sequencing technology to obtain 16S rRNA from the rhizosphere in D. sanguinalis soil near and away from the roadside. The rhizosphere soil microorganisms in the two locations experienced two different levels of disturbance and exhibited notable diversity. Meanwhile, there has been a marked rise in the abundance of the Acidobacteria genus <em>RB41</em> within this lightly disturbed region. The analysis of the co-occurrence network suggests that lightly disturbed areas exhibit the presence of two keystone taxa. In contrast to the heavily disturbed site (HD), the lightly disturbed site (LD) exhibits an increased level of the modular network (0.482 vs. 0.448) and stronger competition within the rhizosphere soil microbial community (positive/negative link ratio, P/N: 0.881 vs. 0.864). The findings from the PLS-SM analysis reveal that keystone taxa have the most total effects on aboveground biomass (0.957). These discoveries have important implications for understanding how different levels of disruption impact soil ecosystems.</div></div>","PeriodicalId":20046,"journal":{"name":"Physiological and Molecular Plant Pathology","volume":"138 ","pages":"Article 102716"},"PeriodicalIF":2.8000,"publicationDate":"2025-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Environment disturbances influence bacterial diversity, structure and co-occurrence network in the Digitaria sanguinalis rhizosphere\",\"authors\":\"Yiming Dai , Ye Cui , Qingchen Xiao , Meiling Ping , Yiming Zhang , Shiguang Hu , Hao Chen , Xiaoyu Li , Jin Chen\",\"doi\":\"10.1016/j.pmpp.2025.102716\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Physicochemical properties of the soil and vegetation types exert primary influences on soil microorganisms, yet there is limited research on the impacts of two different levels of disturbance, especially in the rhizosphere of the <em>Digitaria sanguinalis</em>. To fill this knowledge gap, we employed the Illumina Miseq high-throughput sequencing technology to obtain 16S rRNA from the rhizosphere in D. sanguinalis soil near and away from the roadside. The rhizosphere soil microorganisms in the two locations experienced two different levels of disturbance and exhibited notable diversity. Meanwhile, there has been a marked rise in the abundance of the Acidobacteria genus <em>RB41</em> within this lightly disturbed region. The analysis of the co-occurrence network suggests that lightly disturbed areas exhibit the presence of two keystone taxa. In contrast to the heavily disturbed site (HD), the lightly disturbed site (LD) exhibits an increased level of the modular network (0.482 vs. 0.448) and stronger competition within the rhizosphere soil microbial community (positive/negative link ratio, P/N: 0.881 vs. 0.864). The findings from the PLS-SM analysis reveal that keystone taxa have the most total effects on aboveground biomass (0.957). These discoveries have important implications for understanding how different levels of disruption impact soil ecosystems.</div></div>\",\"PeriodicalId\":20046,\"journal\":{\"name\":\"Physiological and Molecular Plant Pathology\",\"volume\":\"138 \",\"pages\":\"Article 102716\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2025-05-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Physiological and Molecular Plant Pathology\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0885576525001559\",\"RegionNum\":3,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physiological and Molecular Plant Pathology","FirstCategoryId":"97","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0885576525001559","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
Environment disturbances influence bacterial diversity, structure and co-occurrence network in the Digitaria sanguinalis rhizosphere
Physicochemical properties of the soil and vegetation types exert primary influences on soil microorganisms, yet there is limited research on the impacts of two different levels of disturbance, especially in the rhizosphere of the Digitaria sanguinalis. To fill this knowledge gap, we employed the Illumina Miseq high-throughput sequencing technology to obtain 16S rRNA from the rhizosphere in D. sanguinalis soil near and away from the roadside. The rhizosphere soil microorganisms in the two locations experienced two different levels of disturbance and exhibited notable diversity. Meanwhile, there has been a marked rise in the abundance of the Acidobacteria genus RB41 within this lightly disturbed region. The analysis of the co-occurrence network suggests that lightly disturbed areas exhibit the presence of two keystone taxa. In contrast to the heavily disturbed site (HD), the lightly disturbed site (LD) exhibits an increased level of the modular network (0.482 vs. 0.448) and stronger competition within the rhizosphere soil microbial community (positive/negative link ratio, P/N: 0.881 vs. 0.864). The findings from the PLS-SM analysis reveal that keystone taxa have the most total effects on aboveground biomass (0.957). These discoveries have important implications for understanding how different levels of disruption impact soil ecosystems.
期刊介绍:
Physiological and Molecular Plant Pathology provides an International forum for original research papers, reviews, and commentaries on all aspects of the molecular biology, biochemistry, physiology, histology and cytology, genetics and evolution of plant-microbe interactions.
Papers on all kinds of infective pathogen, including viruses, prokaryotes, fungi, and nematodes, as well as mutualistic organisms such as Rhizobium and mycorrhyzal fungi, are acceptable as long as they have a bearing on the interaction between pathogen and plant.