{"title":"DNAStatistX在实验室环境下的校准性能和对似然比阈值的考虑","authors":"Moya McCarthy-Allen , Jerry Hoogenboom , Rolf J.F. Ypma , Corina C.G. Benschop","doi":"10.1016/j.fsigen.2025.103293","DOIUrl":null,"url":null,"abstract":"<div><div>A previous study examining calibration and discrimination performance highlighted the need for caution when interpreting “low” likelihood ratios (LRs) derived from maximum likelihood estimate-based models DNAStatistX and EuroForMix [1]. The study reported that calibration performance was dependent on the dataset, dataset size and the subpopulation correction factor (Fst). In the worst case scenario (smallest dataset and Fst 0.01) miscalibration of LRs occurred up to LR ∼1000. In the best case scenario (largest dataset and Fst 0.03) there were signs of miscalibration up to LR ∼100 but not above. In the current study, the discrimination power and calibration performance were examined for DNAStatistX using a dataset that more closely reflects our casework practice. This involved analysing PowerPlex® Fusion 6C data using two different analytical threshold sets and up to three PCR replicate profiles in the LR calculation. The results showed calibration performance that was comparable or better than previous findings for maximum likelihood based (MLE) models. The use of two different sets of analytical thresholds yielded similar results. Calibration performance decreased when replicate profiles were combined in the LR calculation. Additionally, this study demonstrates that using per-dye LRs to assess calibration performance can be beneficial, especially when the dataset size is limited. Overall, the findings support previous research, suggesting that setting a lower threshold for reporting is useful when using MLE-based models. Ideally, the threshold is as low as possible as that may avoid overlooking valuable evidence. An LR value of 1000 seems supported by the data.</div></div>","PeriodicalId":50435,"journal":{"name":"Forensic Science International-Genetics","volume":"78 ","pages":"Article 103293"},"PeriodicalIF":3.2000,"publicationDate":"2025-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Calibration performance of DNAStatistX in a laboratory setting and considerations for likelihood ratio thresholds\",\"authors\":\"Moya McCarthy-Allen , Jerry Hoogenboom , Rolf J.F. Ypma , Corina C.G. Benschop\",\"doi\":\"10.1016/j.fsigen.2025.103293\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>A previous study examining calibration and discrimination performance highlighted the need for caution when interpreting “low” likelihood ratios (LRs) derived from maximum likelihood estimate-based models DNAStatistX and EuroForMix [1]. The study reported that calibration performance was dependent on the dataset, dataset size and the subpopulation correction factor (Fst). In the worst case scenario (smallest dataset and Fst 0.01) miscalibration of LRs occurred up to LR ∼1000. In the best case scenario (largest dataset and Fst 0.03) there were signs of miscalibration up to LR ∼100 but not above. In the current study, the discrimination power and calibration performance were examined for DNAStatistX using a dataset that more closely reflects our casework practice. This involved analysing PowerPlex® Fusion 6C data using two different analytical threshold sets and up to three PCR replicate profiles in the LR calculation. The results showed calibration performance that was comparable or better than previous findings for maximum likelihood based (MLE) models. The use of two different sets of analytical thresholds yielded similar results. Calibration performance decreased when replicate profiles were combined in the LR calculation. Additionally, this study demonstrates that using per-dye LRs to assess calibration performance can be beneficial, especially when the dataset size is limited. Overall, the findings support previous research, suggesting that setting a lower threshold for reporting is useful when using MLE-based models. Ideally, the threshold is as low as possible as that may avoid overlooking valuable evidence. An LR value of 1000 seems supported by the data.</div></div>\",\"PeriodicalId\":50435,\"journal\":{\"name\":\"Forensic Science International-Genetics\",\"volume\":\"78 \",\"pages\":\"Article 103293\"},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2025-05-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Forensic Science International-Genetics\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1872497325000730\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Forensic Science International-Genetics","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1872497325000730","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Calibration performance of DNAStatistX in a laboratory setting and considerations for likelihood ratio thresholds
A previous study examining calibration and discrimination performance highlighted the need for caution when interpreting “low” likelihood ratios (LRs) derived from maximum likelihood estimate-based models DNAStatistX and EuroForMix [1]. The study reported that calibration performance was dependent on the dataset, dataset size and the subpopulation correction factor (Fst). In the worst case scenario (smallest dataset and Fst 0.01) miscalibration of LRs occurred up to LR ∼1000. In the best case scenario (largest dataset and Fst 0.03) there were signs of miscalibration up to LR ∼100 but not above. In the current study, the discrimination power and calibration performance were examined for DNAStatistX using a dataset that more closely reflects our casework practice. This involved analysing PowerPlex® Fusion 6C data using two different analytical threshold sets and up to three PCR replicate profiles in the LR calculation. The results showed calibration performance that was comparable or better than previous findings for maximum likelihood based (MLE) models. The use of two different sets of analytical thresholds yielded similar results. Calibration performance decreased when replicate profiles were combined in the LR calculation. Additionally, this study demonstrates that using per-dye LRs to assess calibration performance can be beneficial, especially when the dataset size is limited. Overall, the findings support previous research, suggesting that setting a lower threshold for reporting is useful when using MLE-based models. Ideally, the threshold is as low as possible as that may avoid overlooking valuable evidence. An LR value of 1000 seems supported by the data.
期刊介绍:
Forensic Science International: Genetics is the premier journal in the field of Forensic Genetics. This branch of Forensic Science can be defined as the application of genetics to human and non-human material (in the sense of a science with the purpose of studying inherited characteristics for the analysis of inter- and intra-specific variations in populations) for the resolution of legal conflicts.
The scope of the journal includes:
Forensic applications of human polymorphism.
Testing of paternity and other family relationships, immigration cases, typing of biological stains and tissues from criminal casework, identification of human remains by DNA testing methodologies.
Description of human polymorphisms of forensic interest, with special interest in DNA polymorphisms.
Autosomal DNA polymorphisms, mini- and microsatellites (or short tandem repeats, STRs), single nucleotide polymorphisms (SNPs), X and Y chromosome polymorphisms, mtDNA polymorphisms, and any other type of DNA variation with potential forensic applications.
Non-human DNA polymorphisms for crime scene investigation.
Population genetics of human polymorphisms of forensic interest.
Population data, especially from DNA polymorphisms of interest for the solution of forensic problems.
DNA typing methodologies and strategies.
Biostatistical methods in forensic genetics.
Evaluation of DNA evidence in forensic problems (such as paternity or immigration cases, criminal casework, identification), classical and new statistical approaches.
Standards in forensic genetics.
Recommendations of regulatory bodies concerning methods, markers, interpretation or strategies or proposals for procedural or technical standards.
Quality control.
Quality control and quality assurance strategies, proficiency testing for DNA typing methodologies.
Criminal DNA databases.
Technical, legal and statistical issues.
General ethical and legal issues related to forensic genetics.