铜离子对硫氰酸脱氢酶晶体结构和结构的影响

IF 0.6 4区 材料科学 Q4 CRYSTALLOGRAPHY
L. A. Varfolomeeva, A. Yu. Solovieva, N. S. Shipkov, N. I. Dergousova, M. E. Minyaev, K. M. Boyko, T. V. Tikhonova, V. O. Popov
{"title":"铜离子对硫氰酸脱氢酶晶体结构和结构的影响","authors":"L. A. Varfolomeeva,&nbsp;A. Yu. Solovieva,&nbsp;N. S. Shipkov,&nbsp;N. I. Dergousova,&nbsp;M. E. Minyaev,&nbsp;K. M. Boyko,&nbsp;T. V. Tikhonova,&nbsp;V. O. Popov","doi":"10.1134/S1063774524602478","DOIUrl":null,"url":null,"abstract":"<p>The copper-containing enzyme thiocyanate dehydrogenase (TcDH) catalyzes the oxidation of thiocyanate to cyanate and elemental sulfur. The three-dimensional structures of two bacterial TcDH (tpTcDH and pmTcDH) are currently known. Both enzymes are dimers and contain a trinuclear copper center in the active site. An important difference between these enzymes is that the subunits of the tpTcDH dimer have identical conformations in the crystal, whereas the subunits of the pmTcDH dimer have different conformations (open and closed). To elucidate the role of copper ions in changing the conformation of TcDH, the structure of the apo form of pmTcDH was established. In the apo form, both subunits of the dimer have a closed conformation. The soaking of apo-form crystals with copper led to the restoration of the trinuclear center and conformational rearrangements of the subunits.</p>","PeriodicalId":527,"journal":{"name":"Crystallography Reports","volume":"70 1","pages":"8 - 15"},"PeriodicalIF":0.6000,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Effect of Copper Ions on the Crystal Packing and Conformation of Thiocyanate Dehydrogenase in the Crystal Structure\",\"authors\":\"L. A. Varfolomeeva,&nbsp;A. Yu. Solovieva,&nbsp;N. S. Shipkov,&nbsp;N. I. Dergousova,&nbsp;M. E. Minyaev,&nbsp;K. M. Boyko,&nbsp;T. V. Tikhonova,&nbsp;V. O. Popov\",\"doi\":\"10.1134/S1063774524602478\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The copper-containing enzyme thiocyanate dehydrogenase (TcDH) catalyzes the oxidation of thiocyanate to cyanate and elemental sulfur. The three-dimensional structures of two bacterial TcDH (tpTcDH and pmTcDH) are currently known. Both enzymes are dimers and contain a trinuclear copper center in the active site. An important difference between these enzymes is that the subunits of the tpTcDH dimer have identical conformations in the crystal, whereas the subunits of the pmTcDH dimer have different conformations (open and closed). To elucidate the role of copper ions in changing the conformation of TcDH, the structure of the apo form of pmTcDH was established. In the apo form, both subunits of the dimer have a closed conformation. The soaking of apo-form crystals with copper led to the restoration of the trinuclear center and conformational rearrangements of the subunits.</p>\",\"PeriodicalId\":527,\"journal\":{\"name\":\"Crystallography Reports\",\"volume\":\"70 1\",\"pages\":\"8 - 15\"},\"PeriodicalIF\":0.6000,\"publicationDate\":\"2025-05-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Crystallography Reports\",\"FirstCategoryId\":\"88\",\"ListUrlMain\":\"https://link.springer.com/article/10.1134/S1063774524602478\",\"RegionNum\":4,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"CRYSTALLOGRAPHY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Crystallography Reports","FirstCategoryId":"88","ListUrlMain":"https://link.springer.com/article/10.1134/S1063774524602478","RegionNum":4,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CRYSTALLOGRAPHY","Score":null,"Total":0}
引用次数: 0

摘要

含铜酶硫氰酸脱氢酶(TcDH)催化硫氰酸盐氧化为氰酸盐和单质硫。目前已知两种细菌TcDH (tpTcDH和pmTcDH)的三维结构。这两种酶都是二聚体,在活性位点含有一个三核铜中心。这些酶之间的一个重要区别是,tpTcDH二聚体的亚基在晶体中具有相同的构象,而pmTcDH二聚体的亚基具有不同的构象(开放和封闭)。为了阐明铜离子在改变pmTcDH构象中的作用,我们建立了pmTcDH载子形式的结构。在载脂蛋白形式中,二聚体的两个亚基都具有封闭的构象。用铜浸泡复形晶体导致三核中心的恢复和亚基的构象重排。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Effect of Copper Ions on the Crystal Packing and Conformation of Thiocyanate Dehydrogenase in the Crystal Structure

Effect of Copper Ions on the Crystal Packing and Conformation of Thiocyanate Dehydrogenase in the Crystal Structure

The copper-containing enzyme thiocyanate dehydrogenase (TcDH) catalyzes the oxidation of thiocyanate to cyanate and elemental sulfur. The three-dimensional structures of two bacterial TcDH (tpTcDH and pmTcDH) are currently known. Both enzymes are dimers and contain a trinuclear copper center in the active site. An important difference between these enzymes is that the subunits of the tpTcDH dimer have identical conformations in the crystal, whereas the subunits of the pmTcDH dimer have different conformations (open and closed). To elucidate the role of copper ions in changing the conformation of TcDH, the structure of the apo form of pmTcDH was established. In the apo form, both subunits of the dimer have a closed conformation. The soaking of apo-form crystals with copper led to the restoration of the trinuclear center and conformational rearrangements of the subunits.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Crystallography Reports
Crystallography Reports 化学-晶体学
CiteScore
1.10
自引率
28.60%
发文量
96
审稿时长
4-8 weeks
期刊介绍: Crystallography Reports is a journal that publishes original articles short communications, and reviews on various aspects of crystallography: diffraction and scattering of X-rays, electrons, and neutrons, determination of crystal structure of inorganic and organic substances, including proteins and other biological substances; UV-VIS and IR spectroscopy; growth, imperfect structure and physical properties of crystals; thin films, liquid crystals, nanomaterials, partially disordered systems, and the methods of studies.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信