鹅颈藤壶的完整线粒体基因组系统发育证实了东太平洋elegans和东大西洋P. policipes之间的姐妹群关系

IF 1 Q4 GENETICS & HEREDITY
Ruben Alfaro , Guillermo Mantilla , Alan Marín
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引用次数: 0

摘要

鹅颈藤壶是一种迷人的甲壳类动物,它们的分类学分类引起了几位专家的注意,其中包括查尔斯·达尔文,他是第一个注意到在太平洋东海岸发现的两种鹅颈藤壶(elegans)和在大西洋发现的P. policipes之间关系密切的人。来自东太平洋的第三个物种,聚合鱼,被认为是较早从这个群体中分化出来的。在这里,我们使用来自GenBank的短读序列来组装线虫的第一个完整的线粒体基因组。通过完整的线粒体基因组系统发育分析,该基因组被用于评估来自超目胸足区(superorder thoracic calarea)的蜈蚣物种之间的关系。我们的研究结果表明,秀丽隐杆线虫和政策隐杆线虫都聚集在一个支持良好的离散分支中,加强了它们之间的密切关系。另一方面,聚合猪作为一个基础分支出现在policipes谱系中,表明其较早的分化。进一步的工作应着眼于对其他物种的完整有丝分裂基因组进行测序。这些努力将使这一群体的系统发育分析更加全面,其分类仍然是一个争论的主题。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A complete mitochondrial genome-based phylogeny of gooseneck barnacles confirms the sister group relationship between the eastern Pacific Pollicipes elegans and the eastern Atlantic P. pollicipes

A complete mitochondrial genome-based phylogeny of gooseneck barnacles confirms the sister group relationship between the eastern Pacific Pollicipes elegans and the eastern Atlantic P. pollicipes
Gooseneck barnacles are a fascinating group of crustaceans, and their taxonomic classification has attracted the attention of several specialists, including Charles Darwin, who was the first to note the close relationship between two species of gooseneck barnacles found on the eastern coasts of the Pacific, Pollicipes elegans, and the Atlantic, P. pollicipes. A third species from the eastern Pacific, P. polymerus, is believed to have diverged earlier from this group. Here, we used short-read sequences from GenBank to assemble the first complete mitochondrial genome of P. elegans. This genome was then used to assess the relationships of cirripede species from the superorder Thoracicalcarea through a complete mitochondrial genome-based phylogenetic analysis. Our findings revealed that both P. elegans and P. pollicipes clustered together in a well-supported discrete clade, reinforcing the close relationship between them. On the other hand, P. polymerus emerged as a basal branch within the Pollicipes lineage, indicating its earlier divergence from the group. Further efforts should aim to sequence the complete mitogenomes of other species within the order Pollicipedomorpha. Such endeavors will enable a more comprehensive phylogenetic analysis of this group, whose classification continues to be a subject of debate.
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来源期刊
Gene Reports
Gene Reports Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.30
自引率
7.70%
发文量
246
审稿时长
49 days
期刊介绍: Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.
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