{"title":"植物光依赖性原叶绿内酯氧化还原酶催化质子耦合电子转移反应的光/热双立方机制","authors":"Ruiyuan Liu, Jixian Shang, Zepu Gao, Jing Miao, Yiyi Tian, Xiao Hu, Huizhe Lu","doi":"10.1016/j.jcat.2025.116158","DOIUrl":null,"url":null,"abstract":"Light-dependent protochlorophyllide oxidoreductase (LPOR), one of the few natural light-dependent enzymes relies on the cofactor NADPH to catalyze the conversion of protochlorophyllide to chlorophyllide during chlorophyll biosynthesis. However, acquiring the specific details of LPOR photocatalysis mechanism is challenging, as the intermediate species are generally complex and the chemical steps of interest are often kinetically obscure. Herein, the photochemistry associated with the comprehensive mechanism of C17<img alt=\"double bond\" src=\"https://sdfestaticassets-us-east-1.sciencedirectassets.com/shared-assets/55/entities/dbnd.gif\" style=\"vertical-align:middle\"/>C18 bond photoreduction inside LPOR was investigated using all-atom molecular dynamics simulations and electronic structure calculations in conjunction with vibronically nonadiabatic proton-coupled electron transfer (PCET) theory. The calculated electronic excitation spectrum and potential energy surfaces demonstrated that the finely modulated optical gap in the LPOR active center facilitates hole-electron separation and intersystem crossing to access the triplet states, which promotes effective photoredox catalysis by LPOR. The electrostatic coupling nature of the charge transfer reactions was revealed by determining the reaction energy paths related to the active site configuration prior to and after the transfer. The entire reaction was ultimately described as hydrogen atom transfer and subsequent stepwise electron and proton transfer process. This work provides a new perspective on the photocatalysis PCET in enzymatic environment with biochemistry relevance.","PeriodicalId":346,"journal":{"name":"Journal of Catalysis","volume":"17 1","pages":""},"PeriodicalIF":6.5000,"publicationDate":"2025-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Photo/thermo bi-cube mechanism of proton-coupled electron transfer reaction catalyzed by plant light-dependent protochlorophyllide oxidoreductase\",\"authors\":\"Ruiyuan Liu, Jixian Shang, Zepu Gao, Jing Miao, Yiyi Tian, Xiao Hu, Huizhe Lu\",\"doi\":\"10.1016/j.jcat.2025.116158\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Light-dependent protochlorophyllide oxidoreductase (LPOR), one of the few natural light-dependent enzymes relies on the cofactor NADPH to catalyze the conversion of protochlorophyllide to chlorophyllide during chlorophyll biosynthesis. However, acquiring the specific details of LPOR photocatalysis mechanism is challenging, as the intermediate species are generally complex and the chemical steps of interest are often kinetically obscure. Herein, the photochemistry associated with the comprehensive mechanism of C17<img alt=\\\"double bond\\\" src=\\\"https://sdfestaticassets-us-east-1.sciencedirectassets.com/shared-assets/55/entities/dbnd.gif\\\" style=\\\"vertical-align:middle\\\"/>C18 bond photoreduction inside LPOR was investigated using all-atom molecular dynamics simulations and electronic structure calculations in conjunction with vibronically nonadiabatic proton-coupled electron transfer (PCET) theory. The calculated electronic excitation spectrum and potential energy surfaces demonstrated that the finely modulated optical gap in the LPOR active center facilitates hole-electron separation and intersystem crossing to access the triplet states, which promotes effective photoredox catalysis by LPOR. The electrostatic coupling nature of the charge transfer reactions was revealed by determining the reaction energy paths related to the active site configuration prior to and after the transfer. The entire reaction was ultimately described as hydrogen atom transfer and subsequent stepwise electron and proton transfer process. This work provides a new perspective on the photocatalysis PCET in enzymatic environment with biochemistry relevance.\",\"PeriodicalId\":346,\"journal\":{\"name\":\"Journal of Catalysis\",\"volume\":\"17 1\",\"pages\":\"\"},\"PeriodicalIF\":6.5000,\"publicationDate\":\"2025-04-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Catalysis\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1016/j.jcat.2025.116158\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Catalysis","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1016/j.jcat.2025.116158","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Photo/thermo bi-cube mechanism of proton-coupled electron transfer reaction catalyzed by plant light-dependent protochlorophyllide oxidoreductase
Light-dependent protochlorophyllide oxidoreductase (LPOR), one of the few natural light-dependent enzymes relies on the cofactor NADPH to catalyze the conversion of protochlorophyllide to chlorophyllide during chlorophyll biosynthesis. However, acquiring the specific details of LPOR photocatalysis mechanism is challenging, as the intermediate species are generally complex and the chemical steps of interest are often kinetically obscure. Herein, the photochemistry associated with the comprehensive mechanism of C17C18 bond photoreduction inside LPOR was investigated using all-atom molecular dynamics simulations and electronic structure calculations in conjunction with vibronically nonadiabatic proton-coupled electron transfer (PCET) theory. The calculated electronic excitation spectrum and potential energy surfaces demonstrated that the finely modulated optical gap in the LPOR active center facilitates hole-electron separation and intersystem crossing to access the triplet states, which promotes effective photoredox catalysis by LPOR. The electrostatic coupling nature of the charge transfer reactions was revealed by determining the reaction energy paths related to the active site configuration prior to and after the transfer. The entire reaction was ultimately described as hydrogen atom transfer and subsequent stepwise electron and proton transfer process. This work provides a new perspective on the photocatalysis PCET in enzymatic environment with biochemistry relevance.
期刊介绍:
The Journal of Catalysis publishes scholarly articles on both heterogeneous and homogeneous catalysis, covering a wide range of chemical transformations. These include various types of catalysis, such as those mediated by photons, plasmons, and electrons. The focus of the studies is to understand the relationship between catalytic function and the underlying chemical properties of surfaces and metal complexes.
The articles in the journal offer innovative concepts and explore the synthesis and kinetics of inorganic solids and homogeneous complexes. Furthermore, they discuss spectroscopic techniques for characterizing catalysts, investigate the interaction of probes and reacting species with catalysts, and employ theoretical methods.
The research presented in the journal should have direct relevance to the field of catalytic processes, addressing either fundamental aspects or applications of catalysis.