SEC-SAXS 方法在多分散体系研究中的能力:阿朴铁蛋白案例

IF 1.1 Q4 CELL BIOLOGY
I. O. Bezruchko, D. D. Kuklina, E. A. Dronova, A. S. Kazantsev, A. A. Khokhlov, A. V. Vlasov, A. I. Kuklin, Yu. L. Ryzhykau
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引用次数: 0

摘要

本文以具有高度寡聚非均质性的马脾载铁蛋白溶液为例,探讨了尺寸排斥色谱小角度x射线散射方法的性能。为了解释实验数据,我们考虑了含有载铁蛋白球的单体、二聚体和三聚体的多分散溶液模型。二聚体仅以中心间距L来定义,而三聚体以L和顶角值φ来定义。结果表明,采用包含单体、二聚体和一种三聚体的模型,φ约为110°-120°,可以合理地描述色谱的主要部分。模型中两种三聚体的最优φ值分别为110°~ 140°和90°~ 110°;然而,近似结果被认为是模糊的。优选模型(L = 12.5 nm, φ = 120°)的验证表明,对色谱图左侧(洗脱体积<;12.2 mL)的实验数据描述不足,表明这些馏分中存在聚集体。该方法的应用为计算少于4个载铁蛋白微球组成的低聚物的浓度提供了机会,并为不同馏分适当地选择平均范围。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Capabilities of SEC-SAXS Method in Research of Polydisperse Systems: The Case of Apoferritin

Here we explore capabilities of size exclusion chromatography small-angle X-ray scattering method in case of horse spleen apoferritin solution as an example of a system with high oligomerization heterogeneity. For interpretation of the experimental data, we considered models of polydisperse solution containing monomers, dimers, and trimers of apoferritin globules. Dimers were defined only by intercenter distance L, while trimers were characterized by both L and apical corner value φ. We showed that a reasonable description of the major part of the chromatogram could be reached using the model containing monomers, dimers and one type of trimers with φ about 110°–120°. In the case of two types of trimers in the model, optimal φ values were 110°–140° and 90°–110°; however, the approximation results were considered as ambiguous. Validation of the preferred model (L = 12.5 nm, φ = 120°) showed insufficient description of the experimental data for the left part of the chromatogram (elution volume <12.2 mL) indicating the presence of aggregates in these fractions. Application of the method provided the opportunity to calculate concentrations for oligomers consisting of less than four apoferritin globules, and select averaging range for different fractions properly.

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来源期刊
CiteScore
1.40
自引率
0.00%
发文量
28
期刊介绍: Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology   is an international peer reviewed journal that publishes original articles on physical, chemical, and molecular mechanisms that underlie basic properties of biological membranes and mediate membrane-related cellular functions. The primary topics of the journal are membrane structure, mechanisms of membrane transport, bioenergetics and photobiology, intracellular signaling as well as membrane aspects of cell biology, immunology, and medicine. The journal is multidisciplinary and gives preference to those articles that employ a variety of experimental approaches, basically in biophysics but also in biochemistry, cytology, and molecular biology. The journal publishes articles that strive for unveiling membrane and cellular functions through innovative theoretical models and computer simulations.
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