基于铁负荷相关基因的伤口愈合关键靶点和免疫环境鉴定

IF 1.8 4区 医学 Q3 DERMATOLOGY
Yinbo Peng, Juxiang Sheng, Tiantian Liu, Ruizhe He, Peng Xu
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引用次数: 0

摘要

伤口愈合(WH)由于其高发病率和复发率造成了重大的社会经济负担。铁超载(IO)可能是导致WH延迟的一个因素。因此,本研究分析了WH中io相关基因(IORGs),为开发新的治疗策略提供了可能性。对WH组与完整皮肤组进行差异基因表达(DEGs)分析,与IORGs相交,得到差异表达的IORGs (DE-IORGs)。对DE-IORGs进行功能富集分析和潜在药物筛选。构建DE-IORGs蛋白-蛋白相互作用(PPI)网络,利用CytoHubba和MCODE方法鉴定中心基因。绘制枢纽基因的ROC曲线,分析枢纽基因在WH组和IS组中的表达量及基因间相关性。此外,还检测了WH组和IS组的免疫浸润差异,以及中枢基因的miRNA和TFs。最后,通过抓痕愈合实验验证EGFR对皮肤创面愈合的影响。39个DE-IORGs主要富集于HIF-1信号通路和Th17细胞分化等信号通路。确定了治疗WH的潜在药物(如felbamate, SA-94315, GANT-58, rucaparib)。确定了WH中与IO相关的三个枢纽基因(HIF1A、CDKN2A、EGFR),具有诊断价值。免疫浸润分析显示,WH组内皮细胞、巨噬细胞等免疫细胞水平升高。此外,预测了55个mirna(例如,hsa-mir-200a-3p, hsa-mir-218-5p)和2个tf (L3MBTL2, ZNF76)调节这三个枢纽基因。细胞实验表明,EGFR具有促进皮肤创面愈合的作用。该研究提示HIF1A、CDKN2A和EGFR可作为肝素有效诊断的潜在诊断生物标志物,为确定肝素治疗的潜在治疗靶点提供了新的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identifying key targets and immune environment in wound healing based on iron overload-related genes

Wound healing (WH) poses a significant socio-economic burden due to its high incidence and recurrence rates. Iron overload (IO) could be a factor leading to delayed WH. This study thus analyzed IO-related genes (IORGs) in WH, offering possibilities for developing new therapeutic strategies. Differential gene expression (DEGs) analysis was conducted between the WH group and intact skin (IS) group, intersected with IORGs to obtain differentially expressed IORGs (DE-IORGs). Functional enrichment analysis and potential drug screening were performed on DE-IORGs. A protein–protein interaction (PPI) network of DE-IORGs was constructed, and hub genes were identified using CytoHubba and MCODE methods. ROC curves of hub genes were plotted, and their expression levels in WH and IS groups as well as inter-gene correlations were analyzed. Additionally, immune infiltration variances in WH and IS groups, along with miRNA and TFs of hub genes, were examined. Finally, the effect of EGFR on skin wound healing was verified by scratch healing assay. 39 DE-IORGs were predominantly enriched in signaling pathways like HIF-1 signaling pathway and Th17 cell differentiation. Potential drugs for treating WH (e.g., felbamate, SA-94315, GANT-58, rucaparib) were identified. Three hub genes related to IO in WH were pinpointed (HIF1A, CDKN2A, EGFR) with diagnostic value. Immune infiltration analysis showed higher levels of immune cells like endothelial cells and macrophages in the WH group. Additionally, 55 miRNAs (e.g., hsa-mir-200a-3p, hsa-mir-218-5p) and 2 TFs (L3MBTL2, ZNF76) regulating the three hub genes were predicted. Cell experiments showed that EGFR could promote skin wound healing. The study suggested HIF1A, CDKN2A, and EGFR as potential diagnostic biomarkers for effective WH diagnosis, offering new insights into identifying potenti1al therapeutic targets for WH treatment.

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来源期刊
CiteScore
4.10
自引率
3.30%
发文量
30
审稿时长
4-8 weeks
期刊介绍: Archives of Dermatological Research is a highly rated international journal that publishes original contributions in the field of experimental dermatology, including papers on biochemistry, morphology and immunology of the skin. The journal is among the few not related to dermatological associations or belonging to respective societies which guarantees complete independence. This English-language journal also offers a platform for review articles in areas of interest for dermatologists and for publication of innovative clinical trials.
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