{"title":"在模拟数据上使用无监督机器学习计算简单水模型的相图。","authors":"Peter Ogrin,Tomaz Urbic","doi":"10.1021/acs.jctc.4c01456","DOIUrl":null,"url":null,"abstract":"We use unsupervised machine learning to construct a phase diagram of a simple 2D rose water model. The machine learning method that we use is a combination of dimensionality reduction methods and clustering algorithms. Two different data sets from the same simulations are used as input data for machine learning. These are angular distribution functions and a set of different thermodynamic, dynamic, and structural properties. To evaluate the efficiency of the method, the machine learning results are compared to manually determined phase diagrams. We show that the methods successfully predict the phase diagram of the rose water model. Furthermore, the phase diagrams obtained from the two data sets are in semiquantitative agreement with each other. Four different solid phases, one liquid phase, and one gaseous phase were determined. The method we have presented is straightforward and easy to implement. It requires almost no prior knowledge of the system to obtain a phase diagram. The method can also be used to distinguish between the different parts of the same phase that have different properties or a sufficiently different structure, and in this way find local differences and anomalies.","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"218 1","pages":""},"PeriodicalIF":5.5000,"publicationDate":"2025-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Calculating a Phase Diagram of a Simple Water Model Using Unsupervised Machine Learning on Simulation Data.\",\"authors\":\"Peter Ogrin,Tomaz Urbic\",\"doi\":\"10.1021/acs.jctc.4c01456\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We use unsupervised machine learning to construct a phase diagram of a simple 2D rose water model. The machine learning method that we use is a combination of dimensionality reduction methods and clustering algorithms. Two different data sets from the same simulations are used as input data for machine learning. These are angular distribution functions and a set of different thermodynamic, dynamic, and structural properties. To evaluate the efficiency of the method, the machine learning results are compared to manually determined phase diagrams. We show that the methods successfully predict the phase diagram of the rose water model. Furthermore, the phase diagrams obtained from the two data sets are in semiquantitative agreement with each other. Four different solid phases, one liquid phase, and one gaseous phase were determined. The method we have presented is straightforward and easy to implement. It requires almost no prior knowledge of the system to obtain a phase diagram. The method can also be used to distinguish between the different parts of the same phase that have different properties or a sufficiently different structure, and in this way find local differences and anomalies.\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\"218 1\",\"pages\":\"\"},\"PeriodicalIF\":5.5000,\"publicationDate\":\"2025-04-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jctc.4c01456\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.4c01456","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Calculating a Phase Diagram of a Simple Water Model Using Unsupervised Machine Learning on Simulation Data.
We use unsupervised machine learning to construct a phase diagram of a simple 2D rose water model. The machine learning method that we use is a combination of dimensionality reduction methods and clustering algorithms. Two different data sets from the same simulations are used as input data for machine learning. These are angular distribution functions and a set of different thermodynamic, dynamic, and structural properties. To evaluate the efficiency of the method, the machine learning results are compared to manually determined phase diagrams. We show that the methods successfully predict the phase diagram of the rose water model. Furthermore, the phase diagrams obtained from the two data sets are in semiquantitative agreement with each other. Four different solid phases, one liquid phase, and one gaseous phase were determined. The method we have presented is straightforward and easy to implement. It requires almost no prior knowledge of the system to obtain a phase diagram. The method can also be used to distinguish between the different parts of the same phase that have different properties or a sufficiently different structure, and in this way find local differences and anomalies.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.