基于网络药理学结合分子动力学模拟技术的黄芪甲苷A抗肺腺癌机制研究。

IF 3.8 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Jian Ding, Qian Xue, Weizhen Guo, Gang Cheng, Lu Zhang, Tantan Huang, Di Wu, Jiabing Tong, Cheng Yang, Yating Gao, Zegeng Li
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引用次数: 0

摘要

黄芪是一种药食同源的传统中药,本研究利用网络药理学、分子对接、分子动力学和实验验证等方法,探讨了黄芪中的重要活性成分黄芪皂苷甲(AS-A)抗击肺腺癌的机制。研究建立了一个蛋白-蛋白相互作用(PPI)网络,确定了包括 STAT3 和 AKT1 在内的 10 个关键靶点。GO和KEGG富集分析表明,这些靶点主要参与生物过程和途径,包括氧化应激和PI3K-Akt信号途径。分子对接和动态模拟评估了 AS-A 与关键靶点的结合模式和稳定性。在分子对接过程中,HIF-1 信号通路的 14 个关键靶标与 AS-A 的结合能不同,如 PIK3R1 的结合能为-9.3。动力学模拟结果表明,蛋白质配体复合物的 RMSD 值从 0.2 纳米到 0.4 纳米不等,证明了其稳定性。RMSF 分析表明,蛋白质残基柔性特征稳定,Rg 值稳定,氢键数量为 10-20 个,可溶解表面积稳定。细胞实验表明,在肺腺癌模型中,AS-A 可调控 STAT3 和 AKT 等关键信号分子的表达。这项研究深入揭示了AS-A治疗肺腺癌的机制。它为中药尤其是药物和食品的抗癌研究提出了一个新的方向。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Mechanism of astragaloside A against lung adenocarcinoma based on network pharmacology combined with molecular dynamics simulation technique.

This study explores the mechanisms of Astragaloside A (AS-A), a significant active ingredient in Astragalus, This traditional Chinese medicine is both a medication and a food, combating lung adenocarcinoma using network pharmacology, molecular docking, molecular dynamics, and experimental validation. A protein-protein interaction (PPI) network was developed, identifying 10 key targets, including STAT3 and AKT1. GO and KEGG enrichment analyses indicated that these targets primarily participated in biological processes and pathways, including oxidative stress and the PI3K-Akt signalling pathway. Molecular docking and dynamic simulation evaluated AS-A's binding mode and stability with key targets. In molecular docking, 14 key targets of the HIF-1 signalling pathway had different binding energies with AS-A, such as the binding energy of PIK3R1 being -9.3. Kinetic simulations indicated the stability of the protein-ligand complex, as evidenced by RMSD values ranging from 0.2 to 0.4 nm. RMSF analysis showed that the protein residue flexibility characteristics were stable, the Rg values were stable, the number of hydrogen bonds was 10-20, and the solvent-accessible surface area was stable. Cell experiments showed that AS-A could regulate the expression of key signalling molecules such as STAT3 and AKT in lung adenocarcinoma models. This study provides insights into the mechanism of AS-A in treating lung adenocarcinoma. It proposes a new direction for anticancer research in traditional Chinese medicines, especially medications and foods.

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来源期刊
Scientific Reports
Scientific Reports Natural Science Disciplines-
CiteScore
7.50
自引率
4.30%
发文量
19567
审稿时长
3.9 months
期刊介绍: We publish original research from all areas of the natural sciences, psychology, medicine and engineering. You can learn more about what we publish by browsing our specific scientific subject areas below or explore Scientific Reports by browsing all articles and collections. Scientific Reports has a 2-year impact factor: 4.380 (2021), and is the 6th most-cited journal in the world, with more than 540,000 citations in 2020 (Clarivate Analytics, 2021). •Engineering Engineering covers all aspects of engineering, technology, and applied science. It plays a crucial role in the development of technologies to address some of the world''s biggest challenges, helping to save lives and improve the way we live. •Physical sciences Physical sciences are those academic disciplines that aim to uncover the underlying laws of nature — often written in the language of mathematics. It is a collective term for areas of study including astronomy, chemistry, materials science and physics. •Earth and environmental sciences Earth and environmental sciences cover all aspects of Earth and planetary science and broadly encompass solid Earth processes, surface and atmospheric dynamics, Earth system history, climate and climate change, marine and freshwater systems, and ecology. It also considers the interactions between humans and these systems. •Biological sciences Biological sciences encompass all the divisions of natural sciences examining various aspects of vital processes. The concept includes anatomy, physiology, cell biology, biochemistry and biophysics, and covers all organisms from microorganisms, animals to plants. •Health sciences The health sciences study health, disease and healthcare. This field of study aims to develop knowledge, interventions and technology for use in healthcare to improve the treatment of patients.
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