Xiaochuan Li, Hongjian Wang, Xiaofeng Li, Miaoen Zeng, Zhuguang He, Linjie Song, Zhiming Chen, Xinyue Tang, Ang Wang
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Furthermore, the immune infiltrates, the tumor immune dysfunction and exclusion score, and tumor mutation burden score were calculated using the corresponding algorithms, and Mann-Whitney U tests were used to evaluate the differences between groups. Seventy-three hub genes with predictive performance were identified to establish an ADCP-related signature. Accordingly, a 27-gene signature was established, C5a receptor also known as complement component 5a receptor 1, one of the signature genes, had higher expression in tumors than adjacent-normal samples, and its predictive performance was validated in the GSE84437 and The Cancer Genome Atlas cohorts. We found that the ADCP-related signature is an excellent prognostic predictor of STAD. Moreover, the molecular characteristics and some indices of response to immunotherapy differed between the high- and low-risk groups. 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引用次数: 0
摘要
抗体依赖性细胞吞噬(Antibody-dependent cellular phagocytosis, ADCP)是一种免疫生物学过程,在清除肿瘤细胞和对免疫检查点抑制剂的应答中发挥生物学作用。然而,ADCP对胃腺癌(STAD)的作用尚不清楚。临床和基因组数据从多个数据集中提取。利用Cox最小绝对收缩和选择算子回归建立adcp相关特征。用免疫组织化学染色法计算C5a受体(补体成分5a受体1)在肿瘤和邻近正常组织中的表达。通过Cox回归和log-rank检验在训练组和验证组中对签名进行验证。采用相应的算法计算免疫浸润、肿瘤免疫功能障碍和排斥评分、肿瘤突变负担评分,并采用Mann-Whitney U检验评价组间差异。鉴定了73个具有预测性能的枢纽基因,以建立adcp相关特征。因此,我们建立了一个27个基因的标记,其中一个标记基因C5a受体(也称为补体成分5a受体1)在肿瘤中的表达高于邻近正常样本,并在GSE84437和the Cancer Genome Atlas队列中验证了其预测性能。我们发现adcp相关特征是STAD的一个很好的预后预测因子。此外,高危组和低危组免疫治疗反应的分子特征和某些指标也存在差异。我们构建了一个27个基因的特征,该特征与基于stad的免疫治疗的预后和反应有关,并为这种预测功能的生物学机制提供了见解。
An antibody-dependent cellular phagocytosis-related gene signature predicts survival and response to immunotherapy in stomach adenocarcinoma.
Antibody-dependent cellular phagocytosis (ADCP) is an immune biological process and plays a biological role in the clearance of tumor cells and the response to immune checkpoint inhibitors. However, the effects of ADCP on stomach adenocarcinoma (STAD) remain unclear. Clinical and genomic data were extracted from multiple datasets. The ADCP-related signature was established using Cox least absolute shrinkage and selection operator regression. Expression of the C5a receptor also known as complement component 5a receptor 1 in the tumor and adjacent-normal tissues was calculated using immunohistochemistry staining. Validation of the signature was conducted in the training and validation cohorts by Cox regression and log-rank tests. Furthermore, the immune infiltrates, the tumor immune dysfunction and exclusion score, and tumor mutation burden score were calculated using the corresponding algorithms, and Mann-Whitney U tests were used to evaluate the differences between groups. Seventy-three hub genes with predictive performance were identified to establish an ADCP-related signature. Accordingly, a 27-gene signature was established, C5a receptor also known as complement component 5a receptor 1, one of the signature genes, had higher expression in tumors than adjacent-normal samples, and its predictive performance was validated in the GSE84437 and The Cancer Genome Atlas cohorts. We found that the ADCP-related signature is an excellent prognostic predictor of STAD. Moreover, the molecular characteristics and some indices of response to immunotherapy differed between the high- and low-risk groups. We constructed a 27-gene signature that is associated with the prognosis and response to STAD-based immunotherapy and provide insights into the biological mechanisms underlying this predictive function.
期刊介绍:
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