可极化高斯多极模型的各向同性周期和。

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2025-04-22 Epub Date: 2025-04-07 DOI:10.1021/acs.jctc.5c00123
Zhen Huang, Xiongwu Wu, Ray Luo
{"title":"可极化高斯多极模型的各向同性周期和。","authors":"Zhen Huang, Xiongwu Wu, Ray Luo","doi":"10.1021/acs.jctc.5c00123","DOIUrl":null,"url":null,"abstract":"<p><p>The isotropic periodic sum (IPS) method provides an efficient approach for computing long-range interactions by approximating distant molecular structures through isotropic periodic images of a local region. Here, we present a novel integration of IPS with the polarizable Gaussian multipole (pGM) model, extending its applicability to systems with Gaussian-distributed charges and dipoles. By developing and implementing the IPS multipole tensor theorem within the Gaussian multipole framework, we derive analytical expressions for IPS potentials that efficiently handle both permanent and induced multipole interactions. Our comprehensive validation includes energy conservation tests in the <i>NVE</i> ensemble, potential energy distributions in the <i>NVT</i> ensemble, structural analysis through radial distribution functions, diffusion coefficients, induced dipole calculations across various molecular systems, and ionic charging free energies. The results demonstrate that the pGM-IPS approach successfully reproduces energetic, structural, and dynamic properties of molecular systems with accuracy comparable to the traditional particle mesh Ewald method. Our work establishes pGM-IPS as a promising method for simulations of polarizable molecular systems, achieving a balance between computational efficiency and accuracy.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":"4040-4050"},"PeriodicalIF":5.5000,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Isotropic Periodic Sum for Polarizable Gaussian Multipole Model.\",\"authors\":\"Zhen Huang, Xiongwu Wu, Ray Luo\",\"doi\":\"10.1021/acs.jctc.5c00123\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The isotropic periodic sum (IPS) method provides an efficient approach for computing long-range interactions by approximating distant molecular structures through isotropic periodic images of a local region. Here, we present a novel integration of IPS with the polarizable Gaussian multipole (pGM) model, extending its applicability to systems with Gaussian-distributed charges and dipoles. By developing and implementing the IPS multipole tensor theorem within the Gaussian multipole framework, we derive analytical expressions for IPS potentials that efficiently handle both permanent and induced multipole interactions. Our comprehensive validation includes energy conservation tests in the <i>NVE</i> ensemble, potential energy distributions in the <i>NVT</i> ensemble, structural analysis through radial distribution functions, diffusion coefficients, induced dipole calculations across various molecular systems, and ionic charging free energies. The results demonstrate that the pGM-IPS approach successfully reproduces energetic, structural, and dynamic properties of molecular systems with accuracy comparable to the traditional particle mesh Ewald method. Our work establishes pGM-IPS as a promising method for simulations of polarizable molecular systems, achieving a balance between computational efficiency and accuracy.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\" \",\"pages\":\"4040-4050\"},\"PeriodicalIF\":5.5000,\"publicationDate\":\"2025-04-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jctc.5c00123\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/4/7 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.5c00123","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/4/7 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

各向同性周期和(IPS)方法通过局部区域的各向同性周期图像逼近远端分子结构,为计算远程相互作用提供了一种有效的方法。在这里,我们提出了一种新的IPS与极化高斯多极(pGM)模型的集成,将其扩展到具有高斯分布电荷和偶极子的系统。通过在高斯多极框架内发展和实现IPS多极张量定理,我们推导了有效处理永久和诱导多极相互作用的IPS势的解析表达式。我们的综合验证包括NVE系综中的能量守恒测试、NVT系综中的势能分布、通过径向分布函数进行的结构分析、扩散系数、各种分子体系的诱导偶极子计算以及离子充电自由能。结果表明,pGM-IPS方法成功地再现了分子系统的能量、结构和动态特性,其精度与传统的粒子网格Ewald方法相当。我们的工作建立了pGM-IPS作为一种有前途的方法来模拟极化分子系统,实现了计算效率和准确性之间的平衡。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Isotropic Periodic Sum for Polarizable Gaussian Multipole Model.

The isotropic periodic sum (IPS) method provides an efficient approach for computing long-range interactions by approximating distant molecular structures through isotropic periodic images of a local region. Here, we present a novel integration of IPS with the polarizable Gaussian multipole (pGM) model, extending its applicability to systems with Gaussian-distributed charges and dipoles. By developing and implementing the IPS multipole tensor theorem within the Gaussian multipole framework, we derive analytical expressions for IPS potentials that efficiently handle both permanent and induced multipole interactions. Our comprehensive validation includes energy conservation tests in the NVE ensemble, potential energy distributions in the NVT ensemble, structural analysis through radial distribution functions, diffusion coefficients, induced dipole calculations across various molecular systems, and ionic charging free energies. The results demonstrate that the pGM-IPS approach successfully reproduces energetic, structural, and dynamic properties of molecular systems with accuracy comparable to the traditional particle mesh Ewald method. Our work establishes pGM-IPS as a promising method for simulations of polarizable molecular systems, achieving a balance between computational efficiency and accuracy.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信