利用深度学习破译机械驱动聚合物的散射。

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Lijie Ding, Chi-Huan Tung, Bobby G Sumpter, Wei-Ren Chen, Changwoo Do
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引用次数: 0

摘要

提出了一种分析半柔性聚合物在外力作用下二维散射数据的深度学习方法。在我们的框架中,散射函数使用变分自编码器(VAE)压缩到三维潜在空间中,两个转换网络建立了聚合物参数(弯曲模量、拉伸力和稳定剪切力)与散射函数之间的双向映射。训练数据使用离晶格蒙特卡罗模拟生成,以避免晶格模型固有的方向偏差,确保聚合物构象的鲁棒采样。聚合物参数在潜在空间中的有序分布证明了这种双向映射的可行性。通过将转换网络与VAE相结合,我们得到了一个由给定聚合物参数产生散射函数的生成器和一个直接从散射数据中提取聚合物参数的推断器。虽然发电机可以用于传统的最小二乘拟合程序,但推断器在一次通过中产生可比的结果,并且运行速度快3个数量级。该方法为聚合物散射分析提供了一种可扩展的自动化工具,并为将该方法扩展到其他散射模型、实验验证以及时间相关散射数据的研究提供了良好的基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Deciphering the Scattering of Mechanically Driven Polymers Using Deep Learning.

We present a deep learning approach for analyzing two-dimensional scattering data of semiflexible polymers under external forces. In our framework, scattering functions are compressed into a three-dimensional latent space using a Variational Autoencoder (VAE), and two converter networks establish a bidirectional mapping between the polymer parameters (bending modulus, stretching force, and steady shear) and the scattering functions. The training data are generated using off-lattice Monte Carlo simulations to avoid the orientational bias inherent in lattice models, ensuring robust sampling of polymer conformations. The feasibility of this bidirectional mapping is demonstrated by the organized distribution of polymer parameters in the latent space. By integrating the converter networks with the VAE, we obtain a generator that produces scattering functions from given polymer parameters and an inferrer that directly extracts polymer parameters from scattering data. While the generator can be utilized in a traditional least-squares fitting procedure, the inferrer produces comparable results in a single pass and operates 3 orders of magnitude faster. This approach offers a scalable automated tool for polymer scattering analysis and provides a promising foundation for extending the method to other scattering models, experimental validation, and the study of time-dependent scattering data.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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