从异恶唑衍生物中鉴定抗二肽基肽酶IV的新型抗糖尿病2型药物的计算机方法。

IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
3 Biotech Pub Date : 2025-05-01 Epub Date: 2025-04-02 DOI:10.1007/s13205-025-04287-5
Miah Roney, Md Nazim Uddin, Suhaila Sapari, Fazira Ilyana Abdul Razak, A K M Moyeenul Huq, Normaiza Binti Zamri, Mohd Fadhlizil Fasihi Mohd Aluwi
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引用次数: 0

摘要

糖尿病(DM)是21世纪严重的世界性健康问题。此外,糖尿病是一种影响蛋白质、碳水化合物和脂质消化的代谢内分泌疾病,全球有490万人死于糖尿病。本研究旨在利用计算机方法寻找抑制二肽基肽酶IV (DPP-IV)酶的2型糖尿病(T2D)抗糖尿病抑制剂。从一系列已发表的文献来源中,选择了三十(30)个UA的异恶唑衍生物(IDUA)用于本研究。为了确定IDUA、ADMET可能的抑制作用,进行了分子对接、密度泛函理论分析、分子动力学模拟和MM/PBSA。从ADMET研究中选择了11个化合物(1、2、3、4、7、13、18、21、22、24和27),对T2D的DPP-IV酶进行分子对接,结果表明两个化合物(化合物2和化合物3)与参比化合物“利格列汀”具有相当的结合亲和力。参考分子对DPP-IV的结合亲和力为- 8.6 kcal/mol,而化合物2和化合物3的结合亲和力分别为- 8.1和- 8.0 kcal/mol。此外,基于Lipinski's Rule of Five, ELUMO、EHOMO、能带隙、药物相似性和基于dft的研究表明这些化合物具有药物性和高反应性。此外,分子动力学(MD)技术证实了对接配合物保持稳定,对接试验中获得的结合方向是准确的。这些化合物可以在体外和体内进行研究,以开发潜在的T2D抑制剂DPP-IV。补充资料:在线版本包含补充资料,下载地址:10.1007/s13205-025-04287-5。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
In silico approaches to identify novel anti-diabetic type 2 agents against dipeptidyl peptidase IV from isoxazole derivatives of usnic acid.

Diabetes mellitus (DM) is a serious worldwide health issue in the twenty-first century. Additionally, DM, a metabolic endocrine illness that affects the digestion of proteins, carbohydrates, and lipids, has a death rate of 4.9 million individuals globally. This study aims to find anti-diabetic inhibitor for type 2 diabetes (T2D) that inhibits the dipeptidyl peptidase IV (DPP-IV) enzyme using in silico methods. From a range of published literature sources, thirty (30) isoxazole derivatives of UA (IDUA) were selected for this study. To ascertain the possible inhibitory effects of IDUA, ADMET, molecular docking, density functional theory analyses, molecular dynamic simulation and MM/PBSA were conducted. Eleven compounds (1, 2, 3, 4, 7, 13, 18, 21, 22, 24, and 27) were selected from the ADMET study, which were subjected to perform molecular docking against the DPP-IV enzyme of T2D, and findings indicated two compounds (compound 2 and compound 3) showed comparable binding affinity with the reference compound "Linagliptin". In contrast to the reference molecule, which had a binding affinity of - 8.6 kcal/mol against DPP-IV, compound 2 and compound 3 have binding affinities of - 8.1 and - 8.0 kcal/mol, respectively. Furthermore, based on Lipinski's Rule of Five, ELUMO, EHOMO, band energy gap, drug-likeness and DFT-based studies demonstrated druggability and high reactivity for these compounds. In addition, the molecular dynamic (MD) techniques to confirm that docked complexes remained stable and that the binding orientation obtained during docking tests were accurate. These compounds may be investigated in vitro and in vivo for the development of potential DPP-IV of T2D inhibitors.

Supplementary information: The online version contains supplementary material available at 10.1007/s13205-025-04287-5.

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来源期刊
3 Biotech
3 Biotech Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
6.00
自引率
0.00%
发文量
314
期刊介绍: 3 Biotech publishes the results of the latest research related to the study and application of biotechnology to: - Medicine and Biomedical Sciences - Agriculture - The Environment The focus on these three technology sectors recognizes that complete Biotechnology applications often require a combination of techniques. 3 Biotech not only presents the latest developments in biotechnology but also addresses the problems and benefits of integrating a variety of techniques for a particular application. 3 Biotech will appeal to scientists and engineers in both academia and industry focused on the safe and efficient application of Biotechnology to Medicine, Agriculture and the Environment.
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