聚合物场理论模拟中支链嵌段共聚物链传播子计算的动态规划

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Daeseong Yong*,  and , Jaeup U. Kim, 
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引用次数: 0

摘要

我们提出了一种优化聚合物场理论模拟中链传播子计算的算法方法,包括自洽场理论(SCFT)计算和场理论模拟(FTSs)。支链嵌段共聚物的传播算子计算通常涉及递归结构和重叠子问题,导致冗余计算。通过采用动态规划(DP)并将计算依赖编码为字符串,我们的方法系统地消除了支链聚合物混合物中的这些冗余。该算法通过对对称和重复结构的传播子的重用和聚集,实现了各种聚合物体系的最佳时间复杂度,包括星形、梳状、树状聚合物和均聚聚合物混合物。这提高了计算效率,减少了内存的使用,解决了开发多功能聚合物场理论模拟软件的一个关键限制。我们的方法简化了复杂支链聚合物的模拟,无需手动软件调整,为聚合物研究人员提供了更高效的工作流程。此外,该方法通过优化不同支链聚合物结构的计算,实现逆向设计的自动搜索,有助于发现和设计新型聚合物材料。该算法在开源软件中实现,确保了在计算聚合物科学中进一步发展和更广泛应用的可访问性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Dynamic Programming for Chain Propagator Computation of Branched Block Copolymers in Polymer Field Theory Simulations

Dynamic Programming for Chain Propagator Computation of Branched Block Copolymers in Polymer Field Theory Simulations

We present an algorithmic approach to optimize chain propagator computations in polymer field theory simulations, including self-consistent field theory (SCFT) calculations and field-theoretic simulations (FTSs). Propagator calculations for branched block copolymers often involve recursive structures and overlapping subproblems, resulting in redundant computations. By employing dynamic programming (DP) and encoding computational dependencies as strings, our method systematically eliminates these redundancies in mixtures of branched polymers. The algorithm achieves optimal time complexity for various polymeric systems, including star-shaped, comb, dendrimer polymers, and homopolymer mixtures, by reusing and aggregating propagators for symmetric and repetitive structures. This enhances computational efficiency and reduces memory usage, addressing a key limitation in developing versatile polymer field theory simulation software. Our approach streamlines the simulation of complex branched polymers without requiring manual software adjustments, facilitating more efficient workflows for polymer researchers. Furthermore, the method enables automated searches for inverse design by optimizing computations across diverse branched polymer architectures, contributing to the discovery and design of novel polymeric materials. The algorithm is implemented in open-source software, ensuring accessibility for further development and broader application in computational polymer science.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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