IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Tonima Rahman Tuli, Mijan Mia, Ahsan Habib
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引用次数: 0

摘要

肾上腺皮质癌(ACC)是肾上腺皮质出现的一种罕见的、致死率极高的内分泌恶性肿瘤,其特点是预后不良。本研究采用综合生物信息学方法阐明了潜在的分子机制,并确定了新的生物标志物,将其验证为ACC预后的治疗靶点。通过对正常标本和 ACC 标本进行比较分析,RNA-seq 数据在五个基因表达谱中发现了 79 个 DEGs。利用 DAVID 数据库进行的功能富集和通路分析揭示了最重要的 GO 术语和富集 KEGG 通路。利用 STRING 数据库构建了 PPI 网络,然后在 Cytoscape 中进行了模块分析。最后,确定了 10 个枢纽基因,包括 TAGLN、LUM、PDGFRA、FBLN5、MMP2、LAMA2、DCN、IGF1、FBLN1 和 CXCL12,作为潜在的生物标记物。随后的生存分析证实,TAGLN、LUM、LAMA2、FBLN5 和 FBLN1 与患者存活率低有显著关联。此外,TFs-DEGs 和 miRNAs-DEGs 网络分析还发现了 10 个转录和翻译后调控因子。最后,基因-疾病和基因-药物关联分析突出了相关疾病及其有前景的抑制剂。总之,所发现的新型生物标志物和相关通路为诊断和治疗 ACC 的分子机制、预后和潜在的临床应用提供了全面的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Integrated bioinformatics approach for the identification and validation of novel biomarkers in ACC progression and prognosis.

Adrenocortical carcinoma (ACC) is a rare and extremely lethal endocrine malignancy emerging from adrenal cortex, characterized by a poor prognosis. This study, performed integrated bioinformatics to elucidate the underlying molecular mechanisms and identify novel biomarkers, validating them as therapeutic targets for ACC prognosis. The RNA-seq data across five gene expression profiles identified 79 DEGs through a comparative analysis of normal and ACC specimens. Functional enrichment and pathway analyses using the DAVID database revealed the most significant GO terms and enriched KEGG pathways. PPI network was constructed utilizing the STRING database, followed by module analysis in Cytoscape. Finally, 10 hub genes were identified including TAGLN, LUM, PDGFRA, FBLN5, MMP2, LAMA2, DCN, IGF1, FBLN1 and CXCL12 as potential biomarkers. Subsequent survival analysis confirmed that TAGLN, LUM, LAMA2, FBLN5 and FBLN1 are significantly associated with poor patient survivability. Furthermore, TFs-DEGs and miRNAs-DEGs network analyses, identified 10 transcriptional and post-translational regulators. Finally, gene-disease and gene-drug association, highlighted correlated diseases and their promising inhibitors. In conclusion, the identified novel biomarkers and associated pathways, provides a comprehensive insight into the molecular mechanisms, prognosis, and potential clinical applications for the diagnosis and therapeutic interventions of ACC.

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来源期刊
Biomarkers
Biomarkers 医学-毒理学
CiteScore
5.00
自引率
3.80%
发文量
140
审稿时长
3 months
期刊介绍: The journal Biomarkers brings together all aspects of the rapidly growing field of biomarker research, encompassing their various uses and applications in one essential source. Biomarkers provides a vital forum for the exchange of ideas and concepts in all areas of biomarker research. High quality papers in four main areas are accepted and manuscripts describing novel biomarkers and their subsequent validation are especially encouraged: • Biomarkers of disease • Biomarkers of exposure • Biomarkers of response • Biomarkers of susceptibility Manuscripts can describe biomarkers measured in humans or other animals in vivo or in vitro. Biomarkers will consider publishing negative data from studies of biomarkers of susceptibility in human populations.
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