{"title":"导航“尖端雾”:拥抱尖端测量的不确定性。","authors":"Jeremy M Beaulieu, Brian C O'Meara","doi":"10.1093/evolut/qpaf067","DOIUrl":null,"url":null,"abstract":"<p><p>Nature is full of messy variation, which serves as the raw material for evolution. Overlooking this variation not only weakens our analyses but also risks selecting inaccurate models, generating false precision in parameter estimates, and creating artificial patterns. Furthermore, the complexity of uncertainty extends beyond traditional \"measurement error,\" encompassing various sources of variance. To address this, we propose the term \"tip fog\" to describe the variance between the value from the overall modeled evolutionary process and what is recorded, without implying a specific mechanism. We show why accounting for tip fog remains critical by showing its impact on continuous comparative models and discrete comparative and diversification models. We rederive methods to estimate this variance and use simulations to assess its feasibility and importance in a comparative context. Our findings reveal that ignoring tip fog substantially affects the accuracy of rate estimates, with higher tip fog levels showing greater biases from the true rates, as well as affecting which models are chosen. The findings underscore the importance of model selection and the potential consequences of neglecting tip fog, providing insights for improving the accuracy of comparative methods in evolutionary biology.</p>","PeriodicalId":12082,"journal":{"name":"Evolution","volume":" ","pages":""},"PeriodicalIF":3.1000,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Navigating \\\"tip fog\\\": Embracing uncertainty in tip measurements.\",\"authors\":\"Jeremy M Beaulieu, Brian C O'Meara\",\"doi\":\"10.1093/evolut/qpaf067\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Nature is full of messy variation, which serves as the raw material for evolution. Overlooking this variation not only weakens our analyses but also risks selecting inaccurate models, generating false precision in parameter estimates, and creating artificial patterns. Furthermore, the complexity of uncertainty extends beyond traditional \\\"measurement error,\\\" encompassing various sources of variance. To address this, we propose the term \\\"tip fog\\\" to describe the variance between the value from the overall modeled evolutionary process and what is recorded, without implying a specific mechanism. We show why accounting for tip fog remains critical by showing its impact on continuous comparative models and discrete comparative and diversification models. We rederive methods to estimate this variance and use simulations to assess its feasibility and importance in a comparative context. Our findings reveal that ignoring tip fog substantially affects the accuracy of rate estimates, with higher tip fog levels showing greater biases from the true rates, as well as affecting which models are chosen. The findings underscore the importance of model selection and the potential consequences of neglecting tip fog, providing insights for improving the accuracy of comparative methods in evolutionary biology.</p>\",\"PeriodicalId\":12082,\"journal\":{\"name\":\"Evolution\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-04-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Evolution\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://doi.org/10.1093/evolut/qpaf067\",\"RegionNum\":2,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Evolution","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.1093/evolut/qpaf067","RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}
Navigating "tip fog": Embracing uncertainty in tip measurements.
Nature is full of messy variation, which serves as the raw material for evolution. Overlooking this variation not only weakens our analyses but also risks selecting inaccurate models, generating false precision in parameter estimates, and creating artificial patterns. Furthermore, the complexity of uncertainty extends beyond traditional "measurement error," encompassing various sources of variance. To address this, we propose the term "tip fog" to describe the variance between the value from the overall modeled evolutionary process and what is recorded, without implying a specific mechanism. We show why accounting for tip fog remains critical by showing its impact on continuous comparative models and discrete comparative and diversification models. We rederive methods to estimate this variance and use simulations to assess its feasibility and importance in a comparative context. Our findings reveal that ignoring tip fog substantially affects the accuracy of rate estimates, with higher tip fog levels showing greater biases from the true rates, as well as affecting which models are chosen. The findings underscore the importance of model selection and the potential consequences of neglecting tip fog, providing insights for improving the accuracy of comparative methods in evolutionary biology.
期刊介绍:
Evolution, published for the Society for the Study of Evolution, is the premier publication devoted to the study of organic evolution and the integration of the various fields of science concerned with evolution. The journal presents significant and original results that extend our understanding of evolutionary phenomena and processes.