羟恰维醇治疗阿尔茨海默病的潜力鉴定:综合网络药理学、分子对接和动态模拟研究。

IF 1.6 Q4 GERIATRICS & GERONTOLOGY
Journal of Aging Research Pub Date : 2025-03-25 eCollection Date: 2025-01-01 DOI:10.1155/jare/7062203
Priyank Upadhayay, Saurabh K Sinha, Neeraj Kumar, Shashi Kant Singh, Preet Jain, Sunita Panchawat, Nitish Rai
{"title":"羟恰维醇治疗阿尔茨海默病的潜力鉴定:综合网络药理学、分子对接和动态模拟研究。","authors":"Priyank Upadhayay, Saurabh K Sinha, Neeraj Kumar, Shashi Kant Singh, Preet Jain, Sunita Panchawat, Nitish Rai","doi":"10.1155/jare/7062203","DOIUrl":null,"url":null,"abstract":"<p><p>Alzheimer's disease (AD) is a commonly occurring neurodegenerative disease in elderly and it is a leading cause of dementia worldwide. Hydroxychavicol (HC), a major phenolic component of <i>Piper betle,</i> has prominent anti-inflammatory and antioxidant properties, and studies have found its role in cognition improvement. Here is a systematic approach to deciphering the potential protein targets of HC in AD through network pharmacology and validation from molecular docking and dynamics simulation study. First, the druglikeliness of HC was predicted using the SwissADME analysis, which showed significant druglikeliness. A total of 88 possible target genes between HC and AD were obtained from the Swiss Target Prediction, HIT Version 2, DisGeNET, and GeneCards database. The pathway analysis was carried out using the STRING database which showed several genes including COMT, HSP90AA1, and GAPDH as the top hub genes on the basis of degree. GO and KEGG analyses demonstrated that the core targets were mainly involved in cAMP, PI3K/AkT, HIF1, Rap1, and Calcium signaling pathways. The molecular docking of HC with top hub genes resulted in the highest binding of HC with COMT (-8.9 kcal/mol), GAPDH (-6.7 kcal/mol), and HSP90AA1 (-6.5 kcal/mol) that showed stable binding in the molecular dynamics simulation study. COMT regulates the dopamine levels in the prefrontal cortex and impairment of the COMT is associated with the rapid progression of AD. HSP90, a ubiquitous molecular chaperone, is involved in regulating tau metabolism and Aβ processing and found to be downregulated in AD. GAPDH has been reported as the disease-susceptible gene in AD and its interaction with amyloid precursor protein and NFTs has also been reported. These findings suggest that HC is a promising therapeutic candidate, targeting multiple AD-related pathways, warranting further investigation into its molecular mechanisms and potential for clinical application.</p>","PeriodicalId":14933,"journal":{"name":"Journal of Aging Research","volume":"2025 ","pages":"7062203"},"PeriodicalIF":1.6000,"publicationDate":"2025-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11961278/pdf/","citationCount":"0","resultStr":"{\"title\":\"Identification of Therapeutic Potential of Hydroxychavicol Against Alzheimer's Disease: An Integrated Network Pharmacology, Molecular Docking, and Dynamic Simulation Study.\",\"authors\":\"Priyank Upadhayay, Saurabh K Sinha, Neeraj Kumar, Shashi Kant Singh, Preet Jain, Sunita Panchawat, Nitish Rai\",\"doi\":\"10.1155/jare/7062203\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Alzheimer's disease (AD) is a commonly occurring neurodegenerative disease in elderly and it is a leading cause of dementia worldwide. Hydroxychavicol (HC), a major phenolic component of <i>Piper betle,</i> has prominent anti-inflammatory and antioxidant properties, and studies have found its role in cognition improvement. Here is a systematic approach to deciphering the potential protein targets of HC in AD through network pharmacology and validation from molecular docking and dynamics simulation study. First, the druglikeliness of HC was predicted using the SwissADME analysis, which showed significant druglikeliness. A total of 88 possible target genes between HC and AD were obtained from the Swiss Target Prediction, HIT Version 2, DisGeNET, and GeneCards database. The pathway analysis was carried out using the STRING database which showed several genes including COMT, HSP90AA1, and GAPDH as the top hub genes on the basis of degree. GO and KEGG analyses demonstrated that the core targets were mainly involved in cAMP, PI3K/AkT, HIF1, Rap1, and Calcium signaling pathways. The molecular docking of HC with top hub genes resulted in the highest binding of HC with COMT (-8.9 kcal/mol), GAPDH (-6.7 kcal/mol), and HSP90AA1 (-6.5 kcal/mol) that showed stable binding in the molecular dynamics simulation study. COMT regulates the dopamine levels in the prefrontal cortex and impairment of the COMT is associated with the rapid progression of AD. HSP90, a ubiquitous molecular chaperone, is involved in regulating tau metabolism and Aβ processing and found to be downregulated in AD. GAPDH has been reported as the disease-susceptible gene in AD and its interaction with amyloid precursor protein and NFTs has also been reported. These findings suggest that HC is a promising therapeutic candidate, targeting multiple AD-related pathways, warranting further investigation into its molecular mechanisms and potential for clinical application.</p>\",\"PeriodicalId\":14933,\"journal\":{\"name\":\"Journal of Aging Research\",\"volume\":\"2025 \",\"pages\":\"7062203\"},\"PeriodicalIF\":1.6000,\"publicationDate\":\"2025-03-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11961278/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Aging Research\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1155/jare/7062203\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GERIATRICS & GERONTOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Aging Research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1155/jare/7062203","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GERIATRICS & GERONTOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

阿尔茨海默病(AD)是一种常见于老年人的神经退行性疾病,是世界范围内痴呆症的主要原因。羟基茴香醇(Hydroxychavicol, HC)是胡椒中主要的酚类成分,具有显著的抗炎和抗氧化作用,研究发现其具有改善认知的作用。本文通过网络药理学、分子对接和动力学模拟研究验证,系统地解读了HC在AD中的潜在蛋白靶点。首先,使用SwissADME分析预测HC的药物似然性,结果显示具有显著的药物似然性。从Swiss target Prediction、HIT Version 2、DisGeNET和GeneCards数据库中共获得88个HC和AD之间可能的靶基因。利用STRING数据库进行pathway分析,COMT、HSP90AA1、GAPDH等基因按程度排列为top hub基因。GO和KEGG分析表明,核心靶点主要涉及cAMP、PI3K/AkT、HIF1、Rap1和钙信号通路。在分子动力学模拟研究中,HC与top hub基因的分子对接结果表明,HC与COMT (-8.9 kcal/mol)、GAPDH (-6.7 kcal/mol)和HSP90AA1 (-6.5 kcal/mol)的结合最高,且结合稳定。COMT调节前额皮质多巴胺水平,COMT的损伤与AD的快速进展有关。HSP90是一种普遍存在的分子伴侣,参与调节tau代谢和a β加工,并在AD中被发现下调。GAPDH已被报道为AD的疾病易感基因,其与淀粉样蛋白前体蛋白和nft的相互作用也有报道。这些发现表明,HC是一种很有前景的治疗候选者,针对多种ad相关途径,值得进一步研究其分子机制和临床应用潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of Therapeutic Potential of Hydroxychavicol Against Alzheimer's Disease: An Integrated Network Pharmacology, Molecular Docking, and Dynamic Simulation Study.

Alzheimer's disease (AD) is a commonly occurring neurodegenerative disease in elderly and it is a leading cause of dementia worldwide. Hydroxychavicol (HC), a major phenolic component of Piper betle, has prominent anti-inflammatory and antioxidant properties, and studies have found its role in cognition improvement. Here is a systematic approach to deciphering the potential protein targets of HC in AD through network pharmacology and validation from molecular docking and dynamics simulation study. First, the druglikeliness of HC was predicted using the SwissADME analysis, which showed significant druglikeliness. A total of 88 possible target genes between HC and AD were obtained from the Swiss Target Prediction, HIT Version 2, DisGeNET, and GeneCards database. The pathway analysis was carried out using the STRING database which showed several genes including COMT, HSP90AA1, and GAPDH as the top hub genes on the basis of degree. GO and KEGG analyses demonstrated that the core targets were mainly involved in cAMP, PI3K/AkT, HIF1, Rap1, and Calcium signaling pathways. The molecular docking of HC with top hub genes resulted in the highest binding of HC with COMT (-8.9 kcal/mol), GAPDH (-6.7 kcal/mol), and HSP90AA1 (-6.5 kcal/mol) that showed stable binding in the molecular dynamics simulation study. COMT regulates the dopamine levels in the prefrontal cortex and impairment of the COMT is associated with the rapid progression of AD. HSP90, a ubiquitous molecular chaperone, is involved in regulating tau metabolism and Aβ processing and found to be downregulated in AD. GAPDH has been reported as the disease-susceptible gene in AD and its interaction with amyloid precursor protein and NFTs has also been reported. These findings suggest that HC is a promising therapeutic candidate, targeting multiple AD-related pathways, warranting further investigation into its molecular mechanisms and potential for clinical application.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Aging Research
Journal of Aging Research Medicine-Geriatrics and Gerontology
CiteScore
5.40
自引率
0.00%
发文量
11
审稿时长
30 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信