溃疡性结肠炎线粒体代谢相关基因分子亚型和诊断模型的综合分析与单细胞测序。

IF 2.6 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
PLoS ONE Pub Date : 2025-03-28 eCollection Date: 2025-01-01 DOI:10.1371/journal.pone.0320010
Li Li, Xiaoyao Chen, Tao Li, Bing Sun, Bo Zhang, Weifeng Zhang, Junbo Wu, Meng Cui, Guoliang Wu
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引用次数: 0

摘要

溃疡性结肠炎(UC)是一种严重影响患者预期寿命的慢性炎症性肠病。尽管越来越复杂的药物组合可以缓解症状,但仍有10-20%的患者反应不佳。因此,有必要进一步探讨UC的发病机制和潜在的生物标志物。许多线索提示了线粒体代谢在UC中的重要价值,但其作用和相关靶点有待进一步探索。通过公共数据库数据,我们确定了UC中差异表达的线粒体代谢相关基因(MMRG)。随后,我们基于机器学习方法确定了与MMRG相关的生物标志物。在对UC的MMRG相关分子亚型进行分类后,我们综合分析了MMRG生物标志物以及MMRG分子亚型与免疫浸润特征的关系。单细胞测序分析显示MMRG特征在不同细胞亚型中有显著的表达模式。qRT-PCR和western blot进一步证实了所选基因在体外的异常表达。我们的研究结果为MMRG在UC中的作用提供了新的视角。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Integrated analysis and single-cell sequencing of mitochondrial metabolism related gene molecular subtype and diagnostic model in ulcerative colitis.

Ulcerative colitis (UC) is a chronic inflammatory bowel disease that seriously affects the life expectancy of patients. Although increasingly sophisticated combinations of drugs can alleviate symptoms, 10-20% of patients still do not respond well. Therefore, it is necessary to further explore the pathogenesis and potential biomarkers of UC. Many clues have suggested the important value of mitochondrial metabolism in UC, but its role and related targets need to be further explored. By public database data, we identified differentially expressed mitochondrial metabolism related genes (MMRG) in UC. Subsequently, we identified biomarkers associated with MMRG based on a machine learning approach. After classifying the MMRG-associated molecular subtypes of UC, we comprehensively analyzed the MMRG biomarkers and the relationship between the MMRG molecular subtypes and immune infiltration characteristics. Single-cell sequencing analysis showed significant expression pattern of MMRG signatures in different cell subtypes. qRT-PCR and western blot further confirmed the abnormal expressions of selected genes in vitro. Our findings provided a new perspective on the role of MMRG in UC.

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来源期刊
PLoS ONE
PLoS ONE 生物-生物学
CiteScore
6.20
自引率
5.40%
发文量
14242
审稿时长
3.7 months
期刊介绍: PLOS ONE is an international, peer-reviewed, open-access, online publication. PLOS ONE welcomes reports on primary research from any scientific discipline. It provides: * Open-access—freely accessible online, authors retain copyright * Fast publication times * Peer review by expert, practicing researchers * Post-publication tools to indicate quality and impact * Community-based dialogue on articles * Worldwide media coverage
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