单链DNA结合蛋白(SSB)的球形区和无序区之间需要精细的相互作用才能在生理条件下进行动态凝聚。

IF 4.5 3区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Protein Science Pub Date : 2025-04-01 DOI:10.1002/pro.70109
Zoltán J Kovács, Péter Ecsédi, Gábor M Harami, János Pálinkás, Mina Botros, Lamiya Mahmudova, Viktoria Katran, Dávid Érfalvy, Miklós Cervenak, László Smeller, Mihály Kovács
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引用次数: 0

摘要

越来越多的证据表明,液-液相分离(LLPS)驱动的蛋白质凝聚在真核生物和细菌细胞生理学中的重要性。凝聚物的形成可能涉及结构域(球状)和内在无序的蛋白质区域之间的相互作用,并需要多价性,这通常是由寡聚化带来的。在这里,我们通过评估细菌(大肠杆菌)单链DNA结合(SSB)蛋白的工程变异体来剖析这些贡献,其冷凝最近与细菌基因组代谢有关。截断的SSB变体(SSBdC,缺乏保守的c端肽(CTP))被用来评估SSB的球状寡核苷酸/寡糖结合(OB)结构域与CTP之间相互作用的重要性。我们发现OB-CTP相互作用对于生理(拥挤,谷氨酸丰富)环境中的动态缩聚是必不可少的。通过对已知的热敏性SSB -1突变体的蛋白质变异(SSBH55Y)的评估,我们还发现OB-OB接触的扰动显著损害了SSB四聚体的稳定性,并导致热诱导的蛋白质聚集,强调了立体特异性接触带来的多价性的重要性。我们的数据指向了SSB相互作用对生理冷凝的自适应微调,并证明SSB代表了一个通用的系统,用于选择球状和无序区域之间冷凝驱动相互作用的工程。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Fine-tuned interactions between globular and disordered regions of single-stranded DNA binding (SSB) protein are required for dynamic condensation under physiological conditions.

Increasing evidence points to the importance of liquid-liquid phase separation (LLPS)-driven protein condensation in both eukaryotic and bacterial cell physiology. The formation of condensates may involve interactions between both structured (globular) domains and intrinsically disordered protein regions and requires multivalency that is often brought about by oligomerization. Here we dissect such contributions by assessing engineered variants of bacterial (Escherichia coli) single-stranded DNA binding (SSB) protein whose condensation has recently been implicated in bacterial genome metabolism. A truncated SSB variant (SSBdC, lacking the conserved C-terminal peptide (CTP)) was used to assess the importance of interactions between SSB's globular oligonucleotide/oligosaccharide binding (OB) domain and the CTP. We show that OB-CTP interactions are essential for dynamic condensation in physiological (crowded, glutamate-rich) environments. Via assessment of a protein variant (SSBH55Y) from the known thermosensitive ssb-1 mutant, we also show that the perturbation of OB-OB contacts significantly impairs the stability of SSB tetramers and results in thermally induced protein aggregation, underscoring the importance of multivalence brought about by stereospecific contacts. Our data point to adaptive fine-tuning of SSB interactions to physiological condensation and demonstrate that SSB represents a versatile system for selective engineering of condensation-driving interactions between globular and disordered regions.

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来源期刊
Protein Science
Protein Science 生物-生化与分子生物学
CiteScore
12.40
自引率
1.20%
发文量
246
审稿时长
1 months
期刊介绍: Protein Science, the flagship journal of The Protein Society, is a publication that focuses on advancing fundamental knowledge in the field of protein molecules. The journal welcomes original reports and review articles that contribute to our understanding of protein function, structure, folding, design, and evolution. Additionally, Protein Science encourages papers that explore the applications of protein science in various areas such as therapeutics, protein-based biomaterials, bionanotechnology, synthetic biology, and bioelectronics. The journal accepts manuscript submissions in any suitable format for review, with the requirement of converting the manuscript to journal-style format only upon acceptance for publication. Protein Science is indexed and abstracted in numerous databases, including the Agricultural & Environmental Science Database (ProQuest), Biological Science Database (ProQuest), CAS: Chemical Abstracts Service (ACS), Embase (Elsevier), Health & Medical Collection (ProQuest), Health Research Premium Collection (ProQuest), Materials Science & Engineering Database (ProQuest), MEDLINE/PubMed (NLM), Natural Science Collection (ProQuest), and SciTech Premium Collection (ProQuest).
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